Input parameters:
Query = ENSP00000389635 (Len=311)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000389635, Len=311):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLPYTVNFKVSARTLTGALNAHNKAAVDWGWQGLIAYGCHSLVVVIDSITAQTLQVLEKHKADVVKVKWARENYHHNIGS 80
WD40-rpts (_________________WD 1_________________) (______________________WD 2___
Query 81 PYCLRLASADVNGKIIVWDVAAGVAQCEIQEHAYFEKFQLERVNLQEVKRSTYDHTRKCTDQLLLLGQTDREGVQLLCLI 160
WD40-rpts __________________)
Query 161 DKAADACRYLQTYGEWNRAAWLAKVRLNPEECADVLRRWVDHLCSPQVNQKSKALLVLLSLGCFFSVAETLHSMRYFDRA 240
WD40-rpts
Query 241 ALFVEACLKYGAFEVTEDTDKLITAIYADYARSLKNLGFKQGAVLFASKAGAAGKDLLNELESPKEEPIEE 311
WD40-rpts
2 WD40-repeats found in QUERY=ENSP00000389635 (Len=311):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 8-47 5.34 335.42 0.00188 17.5% 20.95
WD 2: Seg 4 51-99 7.76 435.31 8.5e-05 32.5% 44.96
Multiple sequence alignment of 2 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 8-47 FKVSARTLTGALNAHNKAAVDWG----------WQGLIAYGCHSLVVVID
WD 2 51-99 -AQTLQVLEKHKADVVKVKWARENYHHNIGSPYCLRLASADVNGKIIVWD
WD40 Template TGECLRTLSGHTSGVTSVSFSPD----------GKRLVSGSEDGTIKVWD