WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000389635    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000389635 (Len=311)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000389635, Len=311):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLPYTVNFKVSARTLTGALNAHNKAAVDWGWQGLIAYGCHSLVVVIDSITAQTLQVLEKHKADVVKVKWARENYHHNIGS 80  
WD40-rpts             (_________________WD 1_________________)   (______________________WD 2___

Query       81 PYCLRLASADVNGKIIVWDVAAGVAQCEIQEHAYFEKFQLERVNLQEVKRSTYDHTRKCTDQLLLLGQTDREGVQLLCLI 160 
WD40-rpts      __________________)                                                             

Query      161 DKAADACRYLQTYGEWNRAAWLAKVRLNPEECADVLRRWVDHLCSPQVNQKSKALLVLLSLGCFFSVAETLHSMRYFDRA 240 
WD40-rpts                                                                                      

Query      241 ALFVEACLKYGAFEVTEDTDKLITAIYADYARSLKNLGFKQGAVLFASKAGAAGKDLLNELESPKEEPIEE 311 
WD40-rpts                                                                             



2 WD40-repeats found in QUERY=ENSP00000389635 (Len=311):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     8-47       5.34  335.42  0.00188       17.5%     20.95
  WD 2:  Seg  4    51-99       7.76  435.31  8.5e-05       32.5%     44.96
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    8-47     FKVSARTLTGALNAHNKAAVDWG----------WQGLIAYGCHSLVVVID
   WD 2   51-99     -AQTLQVLEKHKADVVKVKWARENYHHNIGSPYCLRLASADVNGKIIVWD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD----------GKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019