Input parameters:
Query = ENSP00000386795 (Len=402)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000386795, Len=402):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 YYEIPGPINKTTERHLAINCVHDRVVCWWPLVNDDAWPWAPISSEKDRANLLLLGYAQGRLEVLSSVRTEWDPLDVRFGT 80
WD40-rpts
Query 81 KQPYQVFTVEHSVSVDKEPMADSCIYECIRNKIQCVSVTRIPLKSKAISCCRNVTEDKLILGCEDSSLILYETHRRVTLL 160
WD40-rpts (___________________WD 1__________________)(_______
Query 161 AQTELLPSLISCHPSGAILLVGSNQGELQIFDMALSPINIQLLAEDRLPRETLQFSKLFDASSSLVQMQWIAPQVVSQKG 240
WD40-rpts __________WD 2_________________)
Query 241 EGSDIYDLLFLRFERGPLGVLLFKLGVFTRGQLGLIDIIFQYIHCDEIYEAINILSSMNWDTLGHQCFISMSAIVNHLLR 320
WD40-rpts
Query 321 QKLTPEREAQLETSLGTFYAPTRPLLDSTILEYRDQISKYARRFFHHLLRYQRFEKAFLLAVDVGARDLFMNSWDPWTEG 400
WD40-rpts
Query 401 IC 402
WD40-rpts
2 WD40-repeats found in QUERY=ENSP00000386795 (Len=402):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 8 110-152 3.50 259.11 0.01988 17.5% 40.86
WD 2: Seg 11 153-192 4.05 281.97 0.00983 25.0% 37.56
Multiple sequence alignment of 2 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 110-152 RNKIQCVSVTRIPLKSKAISCCRNVTEDKLILGCEDSSLILYE
WD 2 153-192 THRRVT---LLAQTELLPSLISCHPSGAILLVGSNQGELQIFD
WD40 Template TGECLR---TLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD