WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000386746    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000386746 (Len=288)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000386746, Len=288):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSAFEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQ 80  
WD40-rpts            (___________________WD 1___________________)(____________________WD 2_____

Query       81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ 160 
WD40-rpts      _______________)           (________________WD 3________________)          (____

Query      161 GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240 
WD40-rpts      ______________WD 4_________________)  (__________________WD 5__________________)

Query      241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK 288 
WD40-rpts              (_________________WD 6_________________)



6 WD40-repeats found in QUERY=ENSP00000386746 (Len=288):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-50       4.46  299.01  0.00580       17.5%     43.96
  WD 2:  Seg  5    51-96       5.72  350.95  0.00116       17.5%     57.27
  WD 3:  Seg 10   108-145      7.56  426.96  0.00011       30.0%     36.66
  WD 4:  Seg 15   156-196      6.61  387.51  0.00037       12.5%     37.87
  WD 5:  Seg 18   199-240      6.91  400.17  0.00025       30.0%     55.51
  WD 6:  Seg 22   249-288      6.65  389.52  0.00035       22.5%     46.08
Multiple sequence alignment of 6 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    7-50     PQI---IA-HIQKGFNYTVFDCKW---VPCSA---KFV-TMGNFARGTGVIQLYE
   WD 2   51-96     IQHGDLKL-LREIEKAKPIKCGTFGATSL-QQ---RYL-ATGDFG---GNLHIWN
   WD 3  108-145    KGH------KEIINAIDGIGGLGI---GE-GA---PEI-VTGSRD---GTVKVWD
   WD 4  156-196    MEP---VQGENKRDCWTVAFGNAY---NQ-EE---RVV-CAGYDN---GDIKLFD
   WD 5  199-240    -NM---AL-RWETNIKNGVCSLEF---DR-KDISMNKL-VATSLE---GKFHVFD
   WD 6  249-288    -GF---AS-VSEKAHKSTVWQVRH---LP-QN---RELFLTAGGA---GGLHLWK

   WD40 Template    TGE---CL-RTLSGHTSGVTSVSF---SP-DG---KRL-VSGSED---GTIKVWD


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Last modified: 09 Jan 2019