Input parameters:
Query = ENSP00000386746 (Len=288)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000386746, Len=288):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSAFEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQ 80
WD40-rpts (___________________WD 1___________________)(____________________WD 2_____
Query 81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ 160
WD40-rpts _______________) (________________WD 3________________) (____
Query 161 GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240
WD40-rpts ______________WD 4_________________) (__________________WD 5__________________)
Query 241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK 288
WD40-rpts (_________________WD 6_________________)
6 WD40-repeats found in QUERY=ENSP00000386746 (Len=288):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 7-50 4.46 299.01 0.00580 17.5% 43.96
WD 2: Seg 5 51-96 5.72 350.95 0.00116 17.5% 57.27
WD 3: Seg 10 108-145 7.56 426.96 0.00011 30.0% 36.66
WD 4: Seg 15 156-196 6.61 387.51 0.00037 12.5% 37.87
WD 5: Seg 18 199-240 6.91 400.17 0.00025 30.0% 55.51
WD 6: Seg 22 249-288 6.65 389.52 0.00035 22.5% 46.08
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 7-50 PQI---IA-HIQKGFNYTVFDCKW---VPCSA---KFV-TMGNFARGTGVIQLYE
WD 2 51-96 IQHGDLKL-LREIEKAKPIKCGTFGATSL-QQ---RYL-ATGDFG---GNLHIWN
WD 3 108-145 KGH------KEIINAIDGIGGLGI---GE-GA---PEI-VTGSRD---GTVKVWD
WD 4 156-196 MEP---VQGENKRDCWTVAFGNAY---NQ-EE---RVV-CAGYDN---GDIKLFD
WD 5 199-240 -NM---AL-RWETNIKNGVCSLEF---DR-KDISMNKL-VATSLE---GKFHVFD
WD 6 249-288 -GF---AS-VSEKAHKSTVWQVRH---LP-QN---RELFLTAGGA---GGLHLWK
WD40 Template TGE---CL-RTLSGHTSGVTSVSF---SP-DG---KRL-VSGSED---GTIKVWD