WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| Pre-calculated Results - Accession: ENSP00000386609 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000386609 (Len=1941) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000386609, Len=1941): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAQGSGGREGALRTPAGGWHSPPSPDMQELLRSVERDLSIDPRQLAPAPGGTHVVALVPARWLASLRDRRLPLGPCPRAE 80
WD40-rpts
Query 81 GLGEAEVRTLLQRSVQRLPAGWTRVEVHGLRKRRLSYPLGGGLPFEDGSCGPETLTRFMQEVAAQNYRNLWRHAYHTYGQ 160
WD40-rpts
Query 161 PYSHSPAPSAVPALDSVRQALQRVYGCSFLPVGETTQCPSYAREGPCPPRGSPACPSLLRAEALLESPEMLYVVHPYVQF 240
WD40-rpts
Query 241 SLHDVVTFSPAKLTNSQAKVLFILFRVLRAMDACHRQGLACGALSLYHIAVDEKLCSELRLDLSAYERPEEDENEEAPVA 320
WD40-rpts
Query 321 RDEAGIVSQEEQGGQPGQPTGQEELRSLVLDWVHGRISNFHYLMQLNRLAGRRQGDPNYHPVLPWVVDFTTPHGRFRDLR 400
WD40-rpts
Query 401 KSKFRLNKGDKQLDFTYEMTRQAFVAGGAGGGEPPHVPHHISDVLSDITYYVYKARRTPRSVLCGHVRAQWEPHEYPASM 480
WD40-rpts
Query 481 ERMQNWTPDECIPEFYTDPSIFRSIHPDMPDLDVPAWCSSSQEFVAAHRALLESREVSRDLHHWIDLTFGYKLQGKEAVK 560
WD40-rpts
Query 561 EKNVCLHLVDAHTHLASYGVVQLFDQPHPQRLAGAPALAPEPPLIPKLLVQTIQETTGREDFTENPGQLPNGVGRPVLEA 640
WD40-rpts
Query 641 TPCEASWTRDRPVAGEDDLEQATEALDSISLAGKAGDQLGSSSQASPGLLSFSVASASRPGRRNKAAGADPGEGEEGRIL 720
WD40-rpts
Query 721 LPEGFNPMQALEELEKTGNFLAKGLGGLLEVPEQPRVQPAVPLQCLLHRDMQALGVLLAEMVFATRVRTLQPDAPLWVRF 800
WD40-rpts
Query 801 QAVRGLCTRHPKEVPVSLQPVLDTLLQMSGPEVPMGAERGKLDQLFEYRPVSQGLPPPCPSQLLSPFSSVVPFPPYFPAL 880
WD40-rpts
Query 881 HRFILLYQARRVEDEAQGRELVFALWQQLGAVLKDITPEGLEILLPFVLSLMSEEHTAVYTAWYLFEPVAKALGPKNANK 960
WD40-rpts
Query 961 YLLKPLIGAYESPCQLHGRFYLYTDCFVAQLMVRLGLQAFLTHLLPHVLQVLAGAEASQEESKDLAGAAEEEESGLPGAG 1040
WD40-rpts
Query 1041 PGSCAFGEEIPMDGEPPASSGLGLPDYTSGVSFHDQADLPETEDFQAGLYVTESPQPQEAEAVSLGRLSDKSSTSETSLG 1120
WD40-rpts
Query 1121 EERAPDEGGAPVDKSSLRSGDSSQDLKQSEGSEEEEEEEDSCVVLEEEEGEQEEVTGASELTLSDTVLSMETVVAGGSGG 1200
WD40-rpts
Query 1201 DGEEEEEALPEQSEGKEQKILLDTACKMVRWLSAKLGPTVASRHVARNLLRLLTSCYVGPTRQQFTVSSGESPPLSAGNI 1280
WD40-rpts
Query 1281 YQKRPVLGDIVSGPVLSCLLHIARLYGEPVLTYQYLPYISYLVAPGSASGPSRLNSRKEAGLLAAVTLTQKIIVYLSDTT 1360
WD40-rpts
Query 1361 LMDILPRISHEVLLPVLSFLTSLVTGFPSGAQARTILCVKTISLIALICLRIGQEMVQQHLSEPVATFFQVFSQLHELRQ 1440
WD40-rpts
Query 1441 QDLKLDPAGRGEGQLPQVVFSDGQQRPVDPALLDELQKVFTLEMAYTIYVPFSCLLGDIIRKIIPNHELVGELAALYLES 1520
WD40-rpts (_________________
Query 1521 ISPSSRNPASVEPTMPGTGPEWDPHGGGCPQDDGHSGTFGSVLVGNRIQIPNDSRPENPGPLGPISGVGGGGLGSGSDDN 1600
WD40-rpts _WD 1_________________)
Query 1601 ALKQELPRSVHGLSGNWLAYWQYEIGVSQQDAHFHFHQIRLQSFPGHSGAVKCVAPLSSEDFFLSGSKDRTVRLWPLYNY 1680
WD40-rpts (_________________WD 2________________)
Query 1681 GDGTSETAPRLVYTQHRKSVFFVGQLEAPQHVVSCDGAVHVWDPFTGKTLRTVEPLDSRVPLTAVAVMPAPHTSITMASS 1760
WD40-rpts (________________WD 3_______________) (__________________WD 4___________
Query 1761 DSTLRFVDCRKPGLQHEFRLGGGLNPGLVRALAISPSGRSVVAGFSSGFMVLLDTRTGLVLRGWPAHEGDILQIKAVEGS 1840
WD40-rpts _______) (_______________WD 5______________) (________________WD 6__
Query 1841 VLVSSSSDHSLTVWKELEQKPTHHYKSASDPIHTFDLYGSEVVTGTVSNKIGVCSLLEPPSQATTKLSSENFRGTLTSLA 1920
WD40-rpts ______________)(_________________WD 7_________________)(____________________WD 8
Query 1921 LLPTKRHLLLGSDNGVIRLLA 1941
WD40-rpts ____________________)
 8 WD40-repeats found in QUERY=ENSP00000386609 (Len=1941): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 20 1503-1543 3.95 277.83 0.01117 25.0% 24.57 WD 2: Seg 27 1638-1676 7.48 423.72 0.00012 27.5% 51.42 WD 3: Seg 31 1687-1723 5.20 329.47 0.00226 25.0% 44.68 WD 4: Seg 35 1727-1768 5.19 328.87 0.00230 32.5% 52.21 WD 5: Seg 40 1780-1814 6.11 367.17 0.00070 22.5% 46.36 WD 6: Seg 43 1818-1855 6.80 395.68 0.00029 30.0% 52.56 WD 7: Seg 47 1856-1895 4.97 320.13 0.00302 20.0% 42.43 WD 8: Seg 51 1896-1941 5.39 337.45 0.00176 22.5% 42.24Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1503-1543 -II------PNHELVGELAALYL--ESISPSSRNP-ASVEPTMPGTGPEWD WD 2 1638-1676 -QI------RLQSFPGHSGA--V--KCVAPLSSED-FFLSGSKDRTVRLWP WD 3 1687-1723 -TA------PRLVYTQHRKS--V--FFVGQLEAPQ-HVVSC--DGAVHVWD WD 4 1727-1768 -GK------TLRTVEPLDSR--VPLTAVAVMPAPHTSITMASSDSTLRFVD WD 5 1780-1814 LG-----------GGLNPGL--V--RALAISPSGR-SVVAGFSSGFMVLLD WD 6 1818-1855 -GL------VLRGWPAHEGD--I--LQIK-AVEGS-VLVSSSSDHSLTVWK WD 7 1856-1895 ELE------QKPTHHYKSAS--D--PIHTFDLYGS-EVVTGTVSNKIGVCS WD 8 1896-1941 LLEPPSQATTKLSSENFRGT--L--TSLALLPTKR-HLLLGSDNGVIRLLA WD40 Template TGE------CLRTLSGHTSG--V--TSVSFSPDGK-RLVSGSEDGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |