Input parameters:
Query = ENSP00000386592 (Len=554)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000386592, Len=554):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MESSDVNKRLEKLSALDYKIFYYEIPGPINKTTERHLAINCVHDRVVCWWPLVNDDAWPWAPISSEKDRANLLLLGYAQG 80
WD40-rpts
Query 81 RLEVLSSVRTEWDPLDVRFGTKQPYQVFTVEHSVSVDKEPMADSCIYECIRNKIQCVSVTRIPLKSKAISCCRNVTEDKL 160
WD40-rpts (___________________WD 1______
Query 161 ILGCEDSSLILYETHRRVTLLAQTELLPSLISCHPSGAILLVGSNQGELQIFDMALSPINIQLLAEDRLPRETLQFSKLF 240
WD40-rpts ____________)(_________________WD 2_________________)
Query 241 DASSSLVQMQWIAPQVVSQKGEGSDIYDLLFLRFERGPLGVLLFKLGVFTRGQLGLIDIIFQYIHCDEIYEAINILSSMN 320
WD40-rpts
Query 321 WDTLGHQCFISMSAIVNHLLRQKLTPEREAQLETSLGTFYAPTRPLLDSTILEYRDQISKYARRFFHHLLRYQRFEKAFL 400
WD40-rpts
Query 401 LAVDVGARDLFMDIHYLALDKGELALAEVARKRASDIDAESITSGVELLGPLDRGDMLNEAFIGLSLAPQGEDSFPDNLP 480
WD40-rpts
Query 481 PSCPTHRHILQQRILNGSSNRQIIDRRNELEKDICSGFLMTNTCNAEDGELREDGREQEIRDGGSLKMIHFGLV 554
WD40-rpts
2 WD40-repeats found in QUERY=ENSP00000386592 (Len=554):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 9 131-173 3.30 250.93 0.02556 17.5% 41.17
WD 2: Seg 12 174-213 4.18 287.52 0.00828 25.0% 36.67
Multiple sequence alignment of 2 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 131-173 RNKIQCVSVTRIPLKSKAISCCRNVTEDKLILGCEDSSLILYE
WD 2 174-213 THRRVT---LLAQTELLPSLISCHPSGAILLVGSNQGELQIFD
WD40 Template TGECLR---TLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD