WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000386592    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000386592 (Len=554)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000386592, Len=554):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MESSDVNKRLEKLSALDYKIFYYEIPGPINKTTERHLAINCVHDRVVCWWPLVNDDAWPWAPISSEKDRANLLLLGYAQG 80  
WD40-rpts                                                                                      

Query       81 RLEVLSSVRTEWDPLDVRFGTKQPYQVFTVEHSVSVDKEPMADSCIYECIRNKIQCVSVTRIPLKSKAISCCRNVTEDKL 160 
WD40-rpts                                                        (___________________WD 1______

Query      161 ILGCEDSSLILYETHRRVTLLAQTELLPSLISCHPSGAILLVGSNQGELQIFDMALSPINIQLLAEDRLPRETLQFSKLF 240 
WD40-rpts      ____________)(_________________WD 2_________________)                           

Query      241 DASSSLVQMQWIAPQVVSQKGEGSDIYDLLFLRFERGPLGVLLFKLGVFTRGQLGLIDIIFQYIHCDEIYEAINILSSMN 320 
WD40-rpts                                                                                      

Query      321 WDTLGHQCFISMSAIVNHLLRQKLTPEREAQLETSLGTFYAPTRPLLDSTILEYRDQISKYARRFFHHLLRYQRFEKAFL 400 
WD40-rpts                                                                                      

Query      401 LAVDVGARDLFMDIHYLALDKGELALAEVARKRASDIDAESITSGVELLGPLDRGDMLNEAFIGLSLAPQGEDSFPDNLP 480 
WD40-rpts                                                                                      

Query      481 PSCPTHRHILQQRILNGSSNRQIIDRRNELEKDICSGFLMTNTCNAEDGELREDGREQEIRDGGSLKMIHFGLV 554 
WD40-rpts                                                                                



2 WD40-repeats found in QUERY=ENSP00000386592 (Len=554):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   131-173      3.30  250.93  0.02556       17.5%     41.17
  WD 2:  Seg 12   174-213      4.18  287.52  0.00828       25.0%     36.67
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  131-173    RNKIQCVSVTRIPLKSKAISCCRNVTEDKLILGCEDSSLILYE
   WD 2  174-213    THRRVT---LLAQTELLPSLISCHPSGAILLVGSNQGELQIFD

   WD40 Template    TGECLR---TLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019