Input parameters:
Query = ENSP00000386415 (Len=638)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000386415, Len=638):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSDKSELKAELERKKQRLAQIREEKKRKEEERKKKETDQKKEAVAPVQEESDLEKKRREAEALLQSMGLTPESPIVFSEY 80
WD40-rpts
Query 81 WVPPPMSPSSKSVSTPSEAGSQDSGDGAVGSRTLHWDTDPSVLQLHSDSDLGRGPIKLGMAKITQVDFPPREIVTYTKET 160
WD40-rpts
Query 161 QTPVMAQPKEDEEEDDDVVAPKPPIEPEEEKTLKKDEENDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQ 240
WD40-rpts
Query 241 INIFFDYSGRDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEDAPHEPDGVALVWNMKY 320
WD40-rpts (__
Query 321 KKTTPEYVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLIS 400
WD40-rpts _________________WD 1___________________) (_________________WD 2______
Query 401 ISTDGKICSWSLDMLSHPQDSMELVHKQSKAVAVTSMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEGHQGPIT 480
WD40-rpts __________)(______________________WD 3_____________________) (______________
Query 481 GIHCHAAVGAVDFSHLFVTSSFDWTVKLWTTKNNKPLYSFEDNADYVYDVMWSPTHPALFACVDGMGRLDLWNLNNDTEV 560
WD40-rpts ______WD 4___________________) (_________________WD 5_________________)(______
Query 561 PTASISVEGNPALNRVRWTHSGREIAVGDSEGQIVIYDVGEQIAVPRNDEWARFGRTLAEINANRADAEEEAATRIPA 638
WD40-rpts ______________WD 6___________________)
6 WD40-repeats found in QUERY=ENSP00000386415 (Len=638):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 6 318-361 3.58 262.62 0.01785 27.5% 42.85
WD 2: Seg 11 373-411 5.20 329.32 0.00227 30.0% 46.30
WD 3: Seg 14 412-460 3.11 243.00 0.03258 30.0% 50.05
WD 4: Seg 18 466-510 5.20 329.41 0.00226 22.5% 42.62
WD 5: Seg 21 514-553 4.80 312.89 0.00378 20.0% 51.49
WD 6: Seg 25 554-598 4.54 302.32 0.00524 15.0% 55.40
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 318-361 MKY-----K--------KTTPEYVFHCQSAVMSATF--AKFH------PNLV-VGGTYSGQIVLWD
WD 2 373-411 TP----------------LS---AAAHTHPVYCVNVVGTQ-N------AHNL-ISISTDGKICSWS
WD 3 412-460 LDM-----LSHPQDSMELVH---KQSKAVAVTSMSF--PVGD------VNNF-VVGSEEGSVYTAC
WD 4 466-510 -AG-----I--------SEM---FEGHQGPITGIHC--HA-AVGAVDFSHLF-VTSSFDWTVKLWT
WD 5 514-553 -NK-----P--------LYS---FEDNADYVYDVMW--SP-T------HPALFACVDGMGRLDLWN
WD 6 554-598 LNNDTEVPT--------ASI---SVEGNPALNRVRW--TH-S------GREI-AVGDSEGQIVIYD
WD40 Template TGE-----C--------LRT---LSGHTSGVTSVSF--SP-D------GKRL-VSGSEDGTIKVWD