WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000385969    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000385969 (Len=920)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000385969, Len=920):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTAEETVNVKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQWDEVLQFIQPLECMEKFDKK 80  
WD40-rpts                                                                                      

Query       81 RFRYIILKQKFLEALCVNNAMSAEDEPQHLEFTMQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTA 160 
WD40-rpts                                                                                      

Query      161 RVHCFEEACVMVAEFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDL 240 
WD40-rpts                                                                                      

Query      241 DLSLLSWLQNLPSSVFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSLNPALDGL 320 
WD40-rpts                                                                                      

Query      321 TCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSLMLENTECHSIYEESPERSDTPVDAQRPIGSEILGQSSVSE 400 
WD40-rpts                                                                                      

Query      401 KEPANGAQNPGPAKQEKNELRDSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQFLNRS 480 
WD40-rpts                                                                                      

Query      481 IQKLGELNIGMDGLGNEVSALNQQCNGSKGNGSNGSSVTSFTTPPQDSSQRLTHDASNIHTSTPRNPGSTNHIPFLEESP 560 
WD40-rpts           (________________WD 1_______________)           (____________________WD 2__

Query      561 CGSQISSEHSVIKPPLGDSPGSLSRSKGEEDDKSKKQFVCINILEDTQAVRAVAFHPAGGLYAVGSNSKTLRVCAYPDVI 640 
WD40-rpts      _________________)                        (______________WD 3_____________)     

Query      641 DPSAHETPKQPVVRFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATGPDLEFSMHDGTIRDLAFMEG 720 
WD40-rpts                 (_________________WD 4________________)(_______________________WD 5__

Query      721 PESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGT 800 
WD40-rpts      _____________________)   (________________WD 6________________)         (_______

Query      801 GSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQL 880 
WD40-rpts      _________WD 7_______________)   (_________________WD 8________________)       (_

Query      881 PIMVVGEHKDKVIQCRWHTQDLSFLSSSADRTVTLWTYNG 920 
WD40-rpts      ________________WD 9________________)   



9 WD40-repeats found in QUERY=ENSP00000385969 (Len=920):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   486-522      4.93  318.21  0.00320       15.0%     23.99
  WD 2:  Seg  7   534-578      5.77  353.14  0.00108       17.5%     19.65
  WD 3:  Seg 10   603-635      6.71  391.88  0.00033       25.0%     46.67
  WD 4:  Seg 13   652-690      7.84  438.47  7.7e-05       27.5%     52.08
  WD 5:  Seg 17   691-742      5.17  328.27  0.00234       20.0%     43.82
  WD 6:  Seg 20   746-783      8.74  475.74  2.4e-05       37.5%     51.10
  WD 7:  Seg 25   793-829      8.93  483.68  1.9e-05       35.0%     45.99
  WD 8:  Seg 28   833-871      9.61  511.50  7.9e-06       42.5%     56.52
  WD 9:  Seg 32   879-917      7.37  419.09  0.00014       17.5%     49.67
Multiple sequence alignment of 9 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  486-522    -------ELN-------IGMDGLGNEVSALNQ-----QCNGS-KGNGSNGSSVTSFT
   WD 2  534-578    HDASNIHTST-------PRNPGSTNHIPFLEE-----SPCGSQISSEHSVIKPPLGD
   WD 3  603-635    -------------------ILEDTQAVRAVAF-----HPAGGLYAVGSNSKTLRVCA
   WD 4  652-690    -V-----VRF-------KRNKHHKGSIYCVAW-----SPCGQLLATGSNDKYVKVLP
   WD 5  691-742    FN-----AETCNATGPDLEFSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTD
   WD 6  746-783    -G-----QGL-------HALSGHTGHILAL-Y-----TWSGWMIASGSQDKTVRFWD
   WD 7  793-829    VG---------------TTFHGTGSAVASVAV-----DPSGRLLATGQEDSSCMLYD
   WD 8  833-871    -G-----RMV-------QSYHPHSSDVRSVRF-----SPGAHYLLTGSYDMKIKVTD
   WD 9  879-917    -Q-----LPI-------MVVGEHKDKVIQCRW-----HTQDLSFLSSSADRTVTLWT

   WD40 Template    TG-----ECL-------RTLSGHTSGVTSVSF-----SPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019