Input parameters:

  Query = ENSP00000384088 (Len=875)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000384088, Len=875):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSGTKPDILWAPHHVDRFVVCDSELSLYHVESTVNSELKAGSLRLSEDSAATLLSINSDTPYMKCVAWYLNYDPECLLAV 80  
WD40-rpts                                                                                      

Query       81 GQANGRVVLTSLGQDHNSKFKDLIGKEFVPKHARQCNTLAWNPLDSNWLAAGLDKHRADFSVLIWDICSKYTPDIVPMEK 160 
WD40-rpts                 (_________________________WD 1________________________)              

Query      161 VKLSAGETETTLLVTKPLYELGQNDACLSLCWLPRDQKLLLAGMHRNLAIFDLRNTSQKMFVNTKAVQGVTVDPYFHDRV 240 
WD40-rpts                                                          (_________________WD 2______

Query      241 ASFYEGQVAIWDLRKFEKPVLTLTEQPKPLTKVAWCPTRTGLLATLTRDSNIIRLYDMQHTPTPIGDETEPTIIERSVQP 320 
WD40-rpts      ___________)    (__________________WD 3_________________)                       

Query      321 CDNYIASFAWHPTSQNRMIVVTPNRTMSDFTVFERISLAWSPITSLMWACGRHLYECTEEENDNSLEKDIATKMRLRALS 400 
WD40-rpts                                                                                      

Query      401 RYGLDTEQVWRNHILAGNEDPQLKSLWYTLHFMKQYTEDMDQKSPGNKGSLVYAGIKSIVKSSLGMVESSRHNWSGLDKQ 480 
WD40-rpts                                                                                      

Query      481 SDIQNLNEERILALQLCGWIKKGTDVDVGPFLNSLVQEGEWERAAAVALFNLDIRRAIQILNEGASSEKGDLNLNVVAMA 560 
WD40-rpts                                                                                      

Query      561 LSGYTDEKNSLWREMCSTLRLQLNNPYLCVMFAFLTSETGSYDGVLYENKVAVRDRVAFACKFLSDTQLNRYIEKLTNEM 640 
WD40-rpts                                                                                      

Query      641 KEAGNLEGILLTGLTKDGVDLMESYVDRTGDVQTASYCMLQGSPLDVLKDERVQYWIENYRNLLDAWRFWHKRAEFDIHR 720 
WD40-rpts                                                                                      

Query      721 SKLDPSSKPLAQVFVSCNFCGKSISYSCSAVPHQGRGFSQYGVSGSPTKSKVTSCPGCRKPLPRCALCLINMGTPVSSCP 800 
WD40-rpts                                                                                      

Query      801 GGTKSDEKVDLSKDKKLAQFNNWFTWCHNCRHGGHAGHMLSWFRDHAECPVSACTCKCMQLDTTGNLVPAETVQP 875 
WD40-rpts                                                                                 

3 WD40-repeats found in QUERY=ENSP00000384088 (Len=875):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7    92-146      3.48  258.37  0.02034       22.5%     35.81
  WD 2:  Seg 13   213-252      6.29  374.35  0.00056       20.0%     43.94
  WD 3:  Seg 17   257-297      3.11  243.13  0.03245       22.5%     49.60

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   92-146    LGQDHNSKFKDLIGKEFVPKHARQCNTLAWNPLDSNWLAAGLDKHRADF-SVLIWD
   WD 2  213-252    LRN----------TSQKMFVNTKAVQGVTVDP-YFHDRVAS----FYEG-QVAIWD
   WD 3  257-297    -EK----------PVLTLTEQPKPLTKVAWCPTRTGLLATL----TRDSNIIRLYD

   WD40 Template    TGE----------CLRTLSGHTSGVTSVSFSP-DGKRLVSG----SEDG-TIKVWD