WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000384032    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000384032 (Len=359)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000384032, Len=359):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRRRAPELYRAPFPLYALQVDPSTGLLIAAGGGGAAKTGIKNGVHFLQLELINGRLSASLLHSHDTETRATMNLALAGD 80  
WD40-rpts      (__________________WD 1_________________)              (_________________WD 2___

Query       81 ILAAGQDAHCQLLRFQAHQQQGNKAEKAGSKEQGPRQRKGAAPAEKKCGAETQHEGLELRVENLQAVQTDFSSDPLQKVV 160 
WD40-rpts      _____________)           (_______________WD 3_______________)  (________________

Query      161 CFNHDNTLLATGGTDGYVRVWKVPSLEKVLEFKAHEGEIEDLALGPDGKLVTVGRDLKASVWQKDQLVTQLHWQENGPTF 240 
WD40-rpts      _WD 4________________)   (________________WD 5________________)          (______

Query      241 SSTPYRYQACSESGTFLGLGTVTGSVAIYIAFSLQCLYYVREAHGIVVTDVAFLPEKGRGPELLGSHETALFSVAVDSRC 320 
WD40-rpts      __________WD 6_______________)(___________________WD 7__________________)       

Query      321 QLHLLPSRRSVPVWLLLLLCVGLIIVTILLLQSAFPGFL 359 
WD40-rpts                                             



7 WD40-repeats found in QUERY=ENSP00000384032 (Len=359):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-41       6.78  394.76  0.00030       15.0%     36.98
  WD 2:  Seg  6    56-94       4.78  312.15  0.00386       15.0%     46.84
  WD 3:  Seg 10   106-141      6.31  375.47  0.00054        7.5%     41.35
  WD 4:  Seg 13   144-182      9.27  497.65  1.2e-05       25.0%     57.23
  WD 5:  Seg 17   186-223      7.42  421.37  0.00013       27.5%     49.44
  WD 6:  Seg 22   234-270      6.84  397.18  0.00028       12.5%     39.34
  WD 7:  Seg 26   271-313      6.80  395.58  0.00029       17.5%     30.64
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-41     MGR---RRAPELYRAPFPLYA-LQVDPSTGLLIAAGGGGAAKTGI
   WD 2   56-94     -RL---SAS-LLHSHDTETRATMNLALAGDILAAGQ-DAHCQLLR
   WD 3  106-141    -------EK-AGSKEQGPRQR-KGAAPAEKKCGAETQHEGLELRV
   WD 4  144-182    -LQ---AVQ-TDFSSDPLQKV-VCFNHDNTLLATGGTDGYVRVWK
   WD 5  186-223    -LE---KVL-EFKAHEGEIED-LALGPDGK-LVTVGRDLKASVWQ
   WD 6  234-270    QE------N-GPTFSSTPYRY-QACSESGTFLGLGTVTGSVAIYI
   WD 7  271-313    AFSLQCLYY-VREAHGIVVTD-VAFLPEKGRGPELLGSHETALFS

   WD40 Template    TGE---CLR-TLSGHTSGVTS-VSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019