Input parameters:
Query = ENSP00000384032 (Len=359)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000384032, Len=359):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGRRRAPELYRAPFPLYALQVDPSTGLLIAAGGGGAAKTGIKNGVHFLQLELINGRLSASLLHSHDTETRATMNLALAGD 80
WD40-rpts (__________________WD 1_________________) (_________________WD 2___
Query 81 ILAAGQDAHCQLLRFQAHQQQGNKAEKAGSKEQGPRQRKGAAPAEKKCGAETQHEGLELRVENLQAVQTDFSSDPLQKVV 160
WD40-rpts _____________) (_______________WD 3_______________) (________________
Query 161 CFNHDNTLLATGGTDGYVRVWKVPSLEKVLEFKAHEGEIEDLALGPDGKLVTVGRDLKASVWQKDQLVTQLHWQENGPTF 240
WD40-rpts _WD 4________________) (________________WD 5________________) (______
Query 241 SSTPYRYQACSESGTFLGLGTVTGSVAIYIAFSLQCLYYVREAHGIVVTDVAFLPEKGRGPELLGSHETALFSVAVDSRC 320
WD40-rpts __________WD 6_______________)(___________________WD 7__________________)
Query 321 QLHLLPSRRSVPVWLLLLLCVGLIIVTILLLQSAFPGFL 359
WD40-rpts
7 WD40-repeats found in QUERY=ENSP00000384032 (Len=359):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-41 6.78 394.76 0.00030 15.0% 36.98
WD 2: Seg 6 56-94 4.78 312.15 0.00386 15.0% 46.84
WD 3: Seg 10 106-141 6.31 375.47 0.00054 7.5% 41.35
WD 4: Seg 13 144-182 9.27 497.65 1.2e-05 25.0% 57.23
WD 5: Seg 17 186-223 7.42 421.37 0.00013 27.5% 49.44
WD 6: Seg 22 234-270 6.84 397.18 0.00028 12.5% 39.34
WD 7: Seg 26 271-313 6.80 395.58 0.00029 17.5% 30.64
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-41 MGR---RRAPELYRAPFPLYA-LQVDPSTGLLIAAGGGGAAKTGI
WD 2 56-94 -RL---SAS-LLHSHDTETRATMNLALAGDILAAGQ-DAHCQLLR
WD 3 106-141 -------EK-AGSKEQGPRQR-KGAAPAEKKCGAETQHEGLELRV
WD 4 144-182 -LQ---AVQ-TDFSSDPLQKV-VCFNHDNTLLATGGTDGYVRVWK
WD 5 186-223 -LE---KVL-EFKAHEGEIED-LALGPDGK-LVTVGRDLKASVWQ
WD 6 234-270 QE------N-GPTFSSTPYRY-QACSESGTFLGLGTVTGSVAIYI
WD 7 271-313 AFSLQCLYY-VREAHGIVVTD-VAFLPEKGRGPELLGSHETALFS
WD40 Template TGE---CLR-TLSGHTSGVTS-VSFSPDGKRLVSGSEDGTIKVWD