WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000383941    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000383941 (Len=278)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000383941, Len=278):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAWSGGLDHQLK 80  
WD40-rpts        (__________________WD 1_________________)  (________________WD 2______________

Query       81 MHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVL 160 
WD40-rpts      __)(__________________WD 3_________________)(_________________WD 4______________

Query      161 VWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI 240 
WD40-rpts      __)(___________________WD 5___________________)               (_________________

Query      241 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTS 278 
WD40-rpts      WD 6_________________)                



6 WD40-repeats found in QUERY=ENSP00000383941 (Len=278):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-43       7.86  439.47  7.4e-05       25.0%     53.66
  WD 2:  Seg  5    46-83       6.63  388.48  0.00036       27.5%     55.56
  WD 3:  Seg  9    84-124      9.09  490.09  1.5e-05       27.5%     54.01
  WD 4:  Seg 13   125-163      5.54  343.50  0.00146       20.0%     38.66
  WD 5:  Seg 17   164-207      6.51  383.65  0.00042       17.5%     55.13
  WD 6:  Seg 22   223-262     10.26  538.65  3.4e-06       20.0%     42.81
Multiple sequence alignment of 6 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    3-43     GS-NE----FKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYD
   WD 2   46-83     -A-NS----MRLKYQHTGAVLDCAFY-D-PTHAWSGGLDHQLKMHD
   WD 3   84-124    LNTDQ----ENLVGTHDAPIRCVEYCPE-VNVMVTGSWDQTVKLWD
   WD 4  125-163    -P-RT----PCNAGTFSQPEKVYTLSVS-GDRLIVGTAGRRVLVWD
   WD 5  164-207    LR-NMGYVQQRRESSLKYQTRCIRAFPN-KQGYVLSSIEGRVAVEY
   WD 6  223-262    CH-RL----KENNIEQIYPVNAISFHNI-HNTFATGGSDGFVNIWD

   WD40 Template    TG-EC----LRTLSGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019