Input parameters:
Query = ENSP00000383941 (Len=278)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000383941, Len=278):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAWSGGLDHQLK 80
WD40-rpts (__________________WD 1_________________) (________________WD 2______________
Query 81 MHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVL 160
WD40-rpts __)(__________________WD 3_________________)(_________________WD 4______________
Query 161 VWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI 240
WD40-rpts __)(___________________WD 5___________________) (_________________
Query 241 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTS 278
WD40-rpts WD 6_________________)
6 WD40-repeats found in QUERY=ENSP00000383941 (Len=278):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 3-43 7.86 439.47 7.4e-05 25.0% 53.66
WD 2: Seg 5 46-83 6.63 388.48 0.00036 27.5% 55.56
WD 3: Seg 9 84-124 9.09 490.09 1.5e-05 27.5% 54.01
WD 4: Seg 13 125-163 5.54 343.50 0.00146 20.0% 38.66
WD 5: Seg 17 164-207 6.51 383.65 0.00042 17.5% 55.13
WD 6: Seg 22 223-262 10.26 538.65 3.4e-06 20.0% 42.81
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 3-43 GS-NE----FKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYD
WD 2 46-83 -A-NS----MRLKYQHTGAVLDCAFY-D-PTHAWSGGLDHQLKMHD
WD 3 84-124 LNTDQ----ENLVGTHDAPIRCVEYCPE-VNVMVTGSWDQTVKLWD
WD 4 125-163 -P-RT----PCNAGTFSQPEKVYTLSVS-GDRLIVGTAGRRVLVWD
WD 5 164-207 LR-NMGYVQQRRESSLKYQTRCIRAFPN-KQGYVLSSIEGRVAVEY
WD 6 223-262 CH-RL----KENNIEQIYPVNAISFHNI-HNTFATGGSDGFVNIWD
WD40 Template TG-EC----LRTLSGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD