Input parameters:
Query = ENSP00000383929 (Len=428)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000383929, Len=428):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTLKSGLTMVGKVVTQLTGTLPSGVTEDDVAIHSNS 80
WD40-rpts
Query 81 RRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILTHPWSSS 160
WD40-rpts (___________________WD 1___________________)
Query 161 QCAVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRTHMSPRVVNRMSRFQKSAGLEEIEQ 240
WD40-rpts (______________WD 2_____________)
Query 241 ELTSKQGGRCSPVPGLSSSPSGSPLHGKLNSQDSYNNFTNNNPGNPRLSPLPSLMVVMPLAQIKQPMTLGTITKRTGKVK 320
WD40-rpts (_________________WD
Query 321 PPPQISPSKSMGGEFCVAAIFGTSRSWFANNAGLKREKDQSKQVVVESLYIISCYGTLVEHMMEPRPLSTAPKIKPLNGM 400
WD40-rpts 3________________)
Query 401 NCSHRLMQTTLCSSLQMQYSIISSCLLA 428
WD40-rpts
3 WD40-repeats found in QUERY=ENSP00000383929 (Len=428):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 5 108-151 5.44 339.52 0.00165 20.0% 53.12
WD 2: Seg 10 172-204 4.67 307.60 0.00445 25.0% 43.04
WD 3: Seg 14 301-339 3.56 261.74 0.01834 15.0% 5.02
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 108-151 DSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQ
WD 2 172-204 RGE----------TEAKVQDICFSHDCRWVVVSTLRGT-SHVFP
WD 3 301-339 -AQ---IKQPMTLGTITKRTGKVKPPPQISPSKSMGGE-FCVAA
WD40 Template TGE---CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGT-IKVWD