WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000383929    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000383929 (Len=428)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000383929, Len=428):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTLKSGLTMVGKVVTQLTGTLPSGVTEDDVAIHSNS 80  
WD40-rpts                                                                                      

Query       81 RRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILTHPWSSS 160 
WD40-rpts                                 (___________________WD 1___________________)         

Query      161 QCAVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRTHMSPRVVNRMSRFQKSAGLEEIEQ 240 
WD40-rpts                 (______________WD 2_____________)                                    

Query      241 ELTSKQGGRCSPVPGLSSSPSGSPLHGKLNSQDSYNNFTNNNPGNPRLSPLPSLMVVMPLAQIKQPMTLGTITKRTGKVK 320 
WD40-rpts                                                                  (_________________WD

Query      321 PPPQISPSKSMGGEFCVAAIFGTSRSWFANNAGLKREKDQSKQVVVESLYIISCYGTLVEHMMEPRPLSTAPKIKPLNGM 400 
WD40-rpts       3________________)                                                             

Query      401 NCSHRLMQTTLCSSLQMQYSIISSCLLA 428 
WD40-rpts                                  



3 WD40-repeats found in QUERY=ENSP00000383929 (Len=428):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   108-151      5.44  339.52  0.00165       20.0%     53.12
  WD 2:  Seg 10   172-204      4.67  307.60  0.00445       25.0%     43.04
  WD 3:  Seg 14   301-339      3.56  261.74  0.01834       15.0%      5.02
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  108-151    DSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQ
   WD 2  172-204    RGE----------TEAKVQDICFSHDCRWVVVSTLRGT-SHVFP
   WD 3  301-339    -AQ---IKQPMTLGTITKRTGKVKPPPQISPSKSMGGE-FCVAA

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGT-IKVWD


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Last modified: 09 Jan 2019