WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000383599    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000383599 (Len=927)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000383599, Len=927):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTAEETVNVKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQWDEVLQFIQPLECMEKFDKK 80  
WD40-rpts                                                                                      

Query       81 RFRYIILKQKFLEALCVNNAMSAEDEPQHVRFLFLKLEFTMQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFK 160 
WD40-rpts                                                                                      

Query      161 DWNPSTARVHCFEEACVMVAEFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLC 240 
WD40-rpts                                                                                      

Query      241 GNGCDDLDLSLLSWLQNLPSSVFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSL 320 
WD40-rpts                                                                                      

Query      321 NPALDGLTCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSLMLENTECHSIYEESPERSDTPVDAQRPIGSEIL 400 
WD40-rpts                                                                                      

Query      401 GQSSVSEKEPANGAQNPGPAKQEKNELRDSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLT 480 
WD40-rpts                                                                                      

Query      481 EQFLNRSIQKLGELNIGMDGLGNEVSALNQQCNGSKGNGSNGSSVTSFTTPPQDSSQRLTHDASNIHTSTPRNPGSTNHI 560 
WD40-rpts                    (_______________WD 1______________)           (___________________

Query      561 PFLEESPCGSQISSEHSVIKPPLGDSPGSLSRSKGEEDDKSKKQFVCINILEDTQAVRAVAFHPAGGLYAVGSNSKTLRV 640 
WD40-rpts      _WD 2___________________)                        (______________WD 3____________

Query      641 CAYPDVIDPSAHETPKQPVVRFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATGPDLEFSMHDGTIR 720 
WD40-rpts      _)                (_________________WD 4________________)(______________________

Query      721 DLAFMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVRFWDLRVPSCVRVV 800 
WD40-rpts      _WD 5_______________________)   (________________WD 6________________)         (

Query      801 GTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQ 880 
WD40-rpts      ________________WD 7_______________)   (_________________WD 8________________)  

Query      881 GDLTKQLPIMVVGEHKDKVIQCRWHTQDLSFLSSSADRTVTLWTYNG 927 
WD40-rpts           (_________________WD 9________________)   



9 WD40-repeats found in QUERY=ENSP00000383599 (Len=927):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   495-529      4.45  298.58  0.00588       12.5%     26.41
  WD 2:  Seg  7   541-585      5.84  355.73  0.00100       17.5%     16.82
  WD 3:  Seg 10   610-642      6.70  391.55  0.00033       25.0%     46.63
  WD 4:  Seg 13   659-697      7.83  438.02  7.8e-05       27.5%     52.21
  WD 5:  Seg 17   698-749      5.17  328.42  0.00233       20.0%     43.07
  WD 6:  Seg 20   753-790      8.74  475.51  2.4e-05       37.5%     51.20
  WD 7:  Seg 25   800-836      8.95  484.44  1.8e-05       35.0%     45.67
  WD 8:  Seg 28   840-878      9.66  513.58  7.4e-06       42.5%     56.79
  WD 9:  Seg 32   886-924      7.50  424.39  0.00012       17.5%     49.66
Multiple sequence alignment of 9 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  495-529    ---------N-------IGMDGLGNEVSALNQ-----QCNGS-KGNGSNGSSVTSFT
   WD 2  541-585    HDASNIHTST-------PRNPGSTNHIPFLEE-----SPCGSQISSEHSVIKPPLGD
   WD 3  610-642    -------------------ILEDTQAVRAVAF-----HPAGGLYAVGSNSKTLRVCA
   WD 4  659-697    -VV-----RF-------KRNKHHKGSIYCVAW-----SPCGQLLATGSNDKYVKVLP
   WD 5  698-749    FNA-----ETCNATGPDLEFSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTD
   WD 6  753-790    -GQ-----GL-------HALSGHTGHILAL-Y-----TWSGWMIASGSQDKTVRFWD
   WD 7  800-836    VG---------------TTFHGTGSAVASVAV-----DPSGRLLATGQEDSSCMLYD
   WD 8  840-878    -GR-----MV-------QSYHPHSSDVRSVRF-----SPGAHYLLTGSYDMKIKVTD
   WD 9  886-924    -QL-----PI-------MVVGEHKDKVIQCRW-----HTQDLSFLSSSADRTVTLWT

   WD40 Template    TGE-----CL-------RTLSGHTSGVTSVSF-----SPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019