Input parameters:
Query = ENSP00000381100 (Len=226)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000381100, Len=226):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMM 80
WD40-rpts (______________WD 1______________) (___________________WD 2_________
Query 81 TRDYLSVKVWDLNMESRPVETHQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFDRDTRRDVTLEA 160
WD40-rpts __________) (________________________WD 3________________________)
Query 161 SRESSKPRASLKPRKVCTGGKRRKDEISVDSLDFNKKILHTAWHPVDNVIAVAATNNLYIFQDKIN 226
WD40-rpts
3 WD40-repeats found in QUERY=ENSP00000381100 (Len=226):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-34 4.81 313.53 0.00370 25.0% 32.88
WD 2: Seg 4 48-91 5.41 337.96 0.00174 27.5% 37.05
WD 3: Seg 7 96-149 5.92 359.00 0.00090 12.5% 45.14
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-34 ------------MEELT---------------EVITAAEFHPHQCNVFVYSSSKGTIRLCD
WD 2 48-91 FEEPEDPSSRSFFSEII---------------SSISDVKFSH-SGRYMMTRD-YLSVKVWD
WD 3 96-149 -SR-----PVETHQVHEYLRSKLCSLYENDCIFDKFECCWNG-SDSAIMTGSYNNFFRMFD
WD40 Template TGE-----CLRTLSGHT---------------SGVTSVSFSP-DGKRLVSGSEDGTIKVWD