Input parameters:
Query = ENSP00000380261 (Len=192)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000380261, Len=192):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MQMARLLGLCAWARKSVRMASSRMTRRDPLTNKVALVTASTDGIGFAIARRLAQDRAHVVVSSRKQQNVDQAVATLQGEG 80
WD40-rpts (______________________________WD 1__________________________
Query 81 LSVTGTVCHVGKAEDRERLVAMAVKLHGGIDILVSNAAVNPFFGSLMDVTEEVWDKLWMDKEKEESMKETLRIRRLGEPE 160
WD40-rpts ____)
Query 161 DCAGIVSFLCSEDASYITGETVVVGGGTPSRL 192
WD40-rpts
1 WD40-repeats found in QUERY=ENSP00000380261 (Len=192):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 20-85 2.90 234.29 0.04247 22.5% 26.29
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 20-85 ASSRMTRRDPLTNKVALVTASTDGIGFAIARRLAQDRAHVVVSSRKQQNVDQAVATLQGEGLSVTG
WD40 Template TGECLRTLSGHTSGVTSVSFSPDG-------------KRLVSGSED-------------GTIKVWD