Accession: ENSP00000379913 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSP00000379913 (Len=346)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000379913, Len=346):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTQQPLRGVTSLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRSNLLALVGGGSSPKFSEISVL 80  
WD40-rpts      (______________WD 1_____________)                                               

Query       81 IWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLKNRIYVYSFPDNPRKLFEFDTRDNPKGLCDLCPSLEKQLLV 160 
WD40-rpts                                                     (____________________WD 2________

Query      161 FPGHKCGSLQLVDLASTKPGTSSAPFTINAHQSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATL 240 
WD40-rpts      ____________)        (_________________WD 3_________________)                   

Query      241 YCDKGTVHIFALKDTRLNRRSALARVGKVGPMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHK 320 
WD40-rpts                                                                                      

Query      321 YVFTPDGNCNREAFDVYLDICDDDDF 346 
WD40-rpts

3 WD40-repeats found in QUERY=ENSP00000379913 (Len=346):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-33       3.45  257.35  0.02099       20.0%     42.25
  WD 2:  Seg 12   128-173      3.70  267.52  0.01535       22.5%     40.82
  WD 3:  Seg 16   182-221      6.74  393.13  0.00031       30.0%     45.43

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-33     ------MT-----QQPLRGVTSLRFNQDQSCFC-CAMETG--VRIYN
   WD 2  128-173    FPDNPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGS-LQLVD
   WD 3  182-221    -SSAPFTI-----NAHQSDIACVSLNQPGTVVA-SASQKGTLIRLFD

   WD40 Template    TGECLRTL-----SGHTSGVTSVSFSPDGKRLV-SGSEDGT-IKVWD