WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000379626    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000379626 (Len=353)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000379626, Len=353):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATEGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVS 80  
WD40-rpts      (_________________WD 1_________________)            (_________________WD 2______

Query       81 SSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACS 160 
WD40-rpts      __________)   (_________________WD 3________________)         (_________________

Query      161 FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES 240 
WD40-rpts      WD 4________________)   (__________________WD 5_________________)   (___________

Query      241 DINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI 320 
WD40-rpts      ______WD 6________________)   (__________________WD 7_________________)   (_____

Query      321 LFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 353 
WD40-rpts      ____________WD 8________________)



8 WD40-repeats found in QUERY=ENSP00000379626 (Len=353):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40       7.81  437.35  7.9e-05       10.0%     32.14
  WD 2:  Seg  4    53-91      10.05  529.85  4.5e-06       40.0%     53.46
  WD 3:  Seg  8    95-133      8.47  464.68  3.4e-05       15.0%     56.23
  WD 4:  Seg 12   143-181      9.01  487.01  1.7e-05       25.0%     53.82
  WD 5:  Seg 16   185-225      8.71  474.34  2.5e-05       35.0%     56.04
  WD 6:  Seg 20   229-267     10.24  537.79  3.5e-06       35.0%     51.97
  WD 7:  Seg 24   271-311      8.03  446.41  6.0e-05       37.5%     57.81
  WD 8:  Seg 28   315-353      9.77  518.14  6.5e-06       40.0%     50.40
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-40     MATEGLHENETL--ASLKSEAESLK--GKLEEERAKLHDVELHQ
   WD 2   53-91     -MKTRRTLKGHG--NKVLCMDWCKD--KRRIVSSSQDGKVIVWD
   WD 3   95-133    -TNKEHAVTMPC--TWVMACAYAPS--GCAIACGGLDNKCSVYP
   WD 4  143-181    -AAKKKSVAMHT--NYLSACSFTNS--DMQILTASGDGTCALWD
   WD 5  185-225    -GQLLQSFHGHG--ADVLCLDLAPSETGNTFVSGGCDKKAMVWD
   WD 6  229-267    -GQCVQAFETHE--SDINSVRYYPS--GDAFASGSDDATCRLYD
   WD 7  271-311    -DREVAIYSKESIIFGASSVDFSLS--GRLLFAGYNDYTINVWD
   WD 8  315-353    -GSRVSILFGHE--NRVSTLRVSPD--GTAFCSGSWDHTLRVWA

   WD40 Template    TGECLRTLSGHT--SGVTSVSFSPD--GKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019