Input parameters:
Query = ENSP00000379626 (Len=353)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000379626, Len=353):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MATEGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVS 80
WD40-rpts (_________________WD 1_________________) (_________________WD 2______
Query 81 SSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACS 160
WD40-rpts __________) (_________________WD 3________________) (_________________
Query 161 FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES 240
WD40-rpts WD 4________________) (__________________WD 5_________________) (___________
Query 241 DINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI 320
WD40-rpts ______WD 6________________) (__________________WD 7_________________) (_____
Query 321 LFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 353
WD40-rpts ____________WD 8________________)
8 WD40-repeats found in QUERY=ENSP00000379626 (Len=353):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-40 7.81 437.35 7.9e-05 10.0% 32.14
WD 2: Seg 4 53-91 10.05 529.85 4.5e-06 40.0% 53.46
WD 3: Seg 8 95-133 8.47 464.68 3.4e-05 15.0% 56.23
WD 4: Seg 12 143-181 9.01 487.01 1.7e-05 25.0% 53.82
WD 5: Seg 16 185-225 8.71 474.34 2.5e-05 35.0% 56.04
WD 6: Seg 20 229-267 10.24 537.79 3.5e-06 35.0% 51.97
WD 7: Seg 24 271-311 8.03 446.41 6.0e-05 37.5% 57.81
WD 8: Seg 28 315-353 9.77 518.14 6.5e-06 40.0% 50.40
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-40 MATEGLHENETL--ASLKSEAESLK--GKLEEERAKLHDVELHQ
WD 2 53-91 -MKTRRTLKGHG--NKVLCMDWCKD--KRRIVSSSQDGKVIVWD
WD 3 95-133 -TNKEHAVTMPC--TWVMACAYAPS--GCAIACGGLDNKCSVYP
WD 4 143-181 -AAKKKSVAMHT--NYLSACSFTNS--DMQILTASGDGTCALWD
WD 5 185-225 -GQLLQSFHGHG--ADVLCLDLAPSETGNTFVSGGCDKKAMVWD
WD 6 229-267 -GQCVQAFETHE--SDINSVRYYPS--GDAFASGSDDATCRLYD
WD 7 271-311 -DREVAIYSKESIIFGASSVDFSLS--GRLLFAGYNDYTINVWD
WD 8 315-353 -GSRVSILFGHE--NRVSTLRVSPD--GTAFCSGSWDHTLRVWA
WD40 Template TGECLRTLSGHT--SGVTSVSFSPD--GKRLVSGSEDGTIKVWD