Input parameters:
Query = ENSP00000379064 (Len=394)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000379064, Len=394):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEIRLPDLALKRIFSFLDLFGLLQVSQVNKHWNRIADSDYLWRSLSLQRWDCSNFTNQHLGTHTWKQFFLHQRRKELRLA 80
WD40-rpts
Query 81 LAQPHNFIYKVTKNIAFETELAYLSGNRLTVDEQEKSIICSVSPKQELCAWDVQEVGDAAGDIYTFTLPGLRDVSKVTAF 160
WD40-rpts (__________________WD 1_________________)
Query 161 QYGIVLLHCSPDKKWVFACGTYSRTLPQVFLTESLLRPSEGSVPLSTFLPHKLCASACWTPKVKNRITLMSQSSTGKKTE 240
WD40-rpts
Query 241 FITFDLTTKKTGGQTVIQAYEIASFQVAAHLKCPIWMGASDGYMIVFTSGPYLLLFSITGFLLQRFEDHQAAINNFWVDP 320
WD40-rpts (_____________________WD 2____________________)
Query 321 CYVLTTSENSVHVYMWEEGGRHPYLRSCCHLENTWHDHTTDSCISSVMCDNASIVLRVRKVSDSSILVMYSLNT 394
WD40-rpts
2 WD40-repeats found in QUERY=ENSP00000379064 (Len=394):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 92-132 3.15 244.78 0.03085 20.0% 31.76
WD 2: Seg 15 251-297 3.13 243.75 0.03184 10.0% 47.76
Multiple sequence alignment of 2 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 92-132 TKNIAFE---------TELAYLSGNRLTVDEQEKSIICSVSPKQELCAWD
WD 2 251-297 TGG-QTVIQAYEIASFQVAAHLKCPIWMGAS--DGYMIVFTSGPYLLLFS
WD40 Template TGE-CLR---------TLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD