WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000374444 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000374444 (Len=3801) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000374444, Len=3801): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSTDSNSLAREFLTDVNRLCNAVVQRVEAREEEEEETHMATLGQYLVHGRGFLLLTKLNSIIDQALTCREELLTLLLSLL 80
WD40-rpts
Query 81 PLVWKIPVQEEKATDFNLPLSADIILTKEKNSSSQRSTQEKLHLEGSALSSQVSAKVNVFRKSRRQRKITHRYSVRDARK 160
WD40-rpts
Query 161 TQLSTSDSEANSDEKGIAMNKHRRPHLLHHFLTSFPKQDHPKAKLDRLATKEQTPPDAMALENSREIIPRQGSNTDILSE 240
WD40-rpts
Query 241 PAALSVISNMNNSPFDLCHVLLSLLEKVCKFDVTLNHNSPLAASVVPTLTEFLAGFGDCCSLSDNLESRVVSAGWTEEPV 320
WD40-rpts
Query 321 ALIQRMLFRTVLHLLSVDVSTAEMMPENLRKNLTELLRAALKIRICLEKQPDPFAPRQKKTLQEVQEDFVFSKYRHRALL 400
WD40-rpts
Query 401 LPELLEGVLQILICCLQSAASNPFYFSQAMDLVQEFIQHHGFNLFETAVLQMEWLVLRDGVPPEASEHLKALINSVMKIM 480
WD40-rpts
Query 481 STVKKVKSEQLHHSMCTRKRHRRCEYSHFMHHHRDLSGLLVSAFKNQVSKNPFEETADGDVYYPERCCCIAVCAHQCLRL 560
WD40-rpts
Query 561 LQQASLSSTCVQILSGVHNIGICCCMDPKSVIIPLLHAFKLPALKNFQQHILNILNKLILDQLGGAEISPKIKKAACNIC 640
WD40-rpts (_____
Query 641 TVDSDQLAQLEETLQGNLCDAELSSSLSSPSYRFQGILPSSGSEDLLWKWDALKAYQNFVFEEDRLHSIQIANHICNLIQ 720
WD40-rpts __________________________WD 1_______________________________)
Query 721 KGNIVVQWKLYNYIFNPVLQRGVELAHHCQHLSVTSAQSHVCSHHNQCLPQDVLQIYVKTLPILLKSRVIRDLFLSCNGV 800
WD40-rpts
Query 801 SQIIELNCLNGIRSHSLKAFETLIISLGEQQKDASVPDIDGIDIEQKELSSVHVGTSFHHQQAYSDSPQSLSKFYAGLKE 880
WD40-rpts
Query 881 AYPKRRKTVNQDVHINTINLFLCVAFLCVSKEAESDRESANDSEDTSGYDSTASEPLSHMLPCISLESLVLPSPEHMHQA 960
WD40-rpts
Query 961 ADIWSMCRWIYMLSSVFQKQFYRLGGFRVCHKLIFMIIQKLFRSHKEEQGKKEGDTSVNENQDLNRISQPKRTMKEDLLS 1040
WD40-rpts
Query 1041 LAIKSDPIPSELGSLKKSADSLGKLELQHISSINVEEVSATEAAPEEAKLFTSQESETSLQSIRLLEALLAICLHGARTS 1120
WD40-rpts
Query 1121 QQKMELELPNQNLSVESILFEMRDHLSQSKVIETQLAKPLFDALLRVALGNYSADFEHNDAMTEKSHQSAEELSSQPGDF 1200
WD40-rpts
Query 1201 SEEAEDSQCCSFKLLVEEEGYEADSESNPEDGETQDDGVDLKSETEGFSASSSPNDLLENLTQGEIIYPEICMLELNLLS 1280
WD40-rpts
Query 1281 ASKAKLDVLAHVFESFLKIIRQKEKNVFLLMQQGTVKNLLGGFLSILTQDDSDFQACQRVLVDLLVSLMSSRTCSEELTL 1360
WD40-rpts
Query 1361 LLRIFLEKSPCTKILLLGILKIIESDTTMSPSQYLTFPLLHAPNLSNGVSSQKYPGILNSKAMGLLRRARVSRSKKEADR 1440
WD40-rpts
Query 1441 ESFPHRLLSSWHIAPVHLPLLGQNCWPHLSEGFSVSLWFNVECIHEAESTTEKGKKIKKRNKSLILPDSSFDGTESDRPE 1520
WD40-rpts
Query 1521 GAEYINPGERLIEEGCIHIISLGSKALMIQVWADPHNATLIFRVCMDSNDDMKAVLLAQVESQENIFLPSKWQHLVLTYL 1600
WD40-rpts
Query 1601 QQPQGKRRIHGKISIWVSGQRKPDVTLDFMLPRKTSLSSDSNKTFCMIGHCLSSQEEFLQLAGKWDLGNLLLFNGAKVGS 1680
WD40-rpts
Query 1681 QEAFYLYACGPNHTSVMPCKYGKPVNDYSKYINKEILRCEQIRELFMTKKDVDIGLLIESLSVVYTTYCPAQYTIYEPVI 1760
WD40-rpts
Query 1761 RLKGQMKTQLSQRPFSSKEVQSILLEPHHLKNLQPTEYKTIQGILHEIGGTGIFVFLFARVVELSSCEETQALALRVILS 1840
WD40-rpts
Query 1841 LIKYNQQRVHELENCNGLSMIHQVLIKQKCIVGFYILKTLLEGCCGEDIIYMNENGEFKLDVDSNAIIQDVKLLEELLLD 1920
WD40-rpts
Query 1921 WKIWSKAEQGVWETLLAALEVLIRADHHQQMFNIKQLLKAQVVHHFLLTCQVLQEYKEGQLTPMPREVCRSFVKIIAEVL 2000
WD40-rpts
Query 2001 GSPPDLELLTIIFNFLLAVHPPTNTYVCHNPTNFYFSLHIDGKIFQEKVRSIMYLRHSSSGGRSLMSPGFMVISPSGFTA 2080
WD40-rpts
Query 2081 SPYEGENSSNIIPQQMAAHMLRSRSLPAFPTSSLLTQSQKLTGSLGCSIDRLQNIADTYVATQSKKQNSLGSSDTLKKGK 2160
WD40-rpts
Query 2161 EDAFISSCESAKTVCEMEAVLSAQVSVSDVPKGVLGFPVVKADHKQLGAEPRSEDDSPGDESCPRRPDYLKGLASFQRSH 2240
WD40-rpts
Query 2241 STIASLGLAFPSQNGSAAVGRWPSLVDRNTDDWENFAYSLGYEPNYNRTASAHSVTEDCLVPICCGLYELLSGVLLILPD 2320
WD40-rpts
Query 2321 VLLEDVMDKLIQADTLLVLVNHPSPAIQQGVIKLLDAYFARASKEQKDKFLKNRGFSLLANQLYLHRGTQELLECFIEMF 2400
WD40-rpts
Query 2401 FGRHIGLDEEFDLEDVRNMGLFQKWSVIPILGLIETSLYDNILLHNALLLLLQILNSCSKVADMLLDNGLLYVLCNTVAA 2480
WD40-rpts
Query 2481 LNGLEKNIPMSEYKLLACDIQQLFIAVTIHACSSSGSQYFRVIEDLIVMLGYLQNSKNKRTQNMAVALQLRVLQAAMEFI 2560
WD40-rpts
Query 2561 RTTANHDSENLTDSLQSPSAPHHAVVQKRKSIAGPRKFPLAQTESLLMKMRSVANDELHVMMQRRMSQENPSQATETELA 2640
WD40-rpts
Query 2641 QRLQRLTVLAVNRIIYQEFNSDIIDILRTPENVTQSKTSVFQTEISEENIHHEQSSVFNPFQKEIFTYLVEGFKVSIGSS 2720
WD40-rpts
Query 2721 KASGSKQQWTKILWSCKETFRMQLGRLLVHILSPAHAAQERKQIFEIVHEPNHQEILRDCLSPSLQHGAKLVLYLSELIH 2800
WD40-rpts
Query 2801 NHQGELTEEELGTAELLMNALKLCGHKCIPPSASTKADLIKMIKEEQKKYETEEGVNKAAWQKTVNNNQQSLFQRLDSKS 2880
WD40-rpts
Query 2881 KDISKIAADITQAVSLSQGNERKKVIQHIRGMYKVDLSASRHWQELIQQLTHDRAVWYDPIYYPTSWQLDPTEGPNRERR 2960
WD40-rpts
Query 2961 RLQRCYLTIPNKYLLRDRQKSEDVVKPPLSYLFEDKTHSSFSSTVKDKAASESIRVNRRCISVAPSRETAGELLLGKCGM 3040
WD40-rpts
Query 3041 YFVEDNASDTVESSSLQGELEPASFSWTYEEIKEVHKRWWQLRDNAVEIFLTNGRTLLLAFDNTKVRDDVYHNILTNNLP 3120
WD40-rpts
Query 3121 NLLEYGNITALTNLWYTGQITNFEYLTHLNKHAGRSFNDLMQYPVFPFILADYVSETLDLNDLLIYRNLSKPIAVQYKEK 3200
WD40-rpts
Query 3201 EDRYVDTYKYLEEEYRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWR 3280
WD40-rpts
Query 3281 LSSFESMTDVKELIPEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESDYVSQNICQWIDL 3360
WD40-rpts
Query 3361 VFGYKQKGKASVQAINVFHPATYFGMDVSAVEDPVQRRALETMIKTYGQTPRQLFHMAHVSRPGAKLNIEGELPAAVGLL 3440
WD40-rpts
Query 3441 VQFAFRETREQVKEITYPSPLSWIKGLKWGEYVGSPSAPVPVVCFSQPHGERFGSLQALPTRAICGLSRNFCLLMTYSKE 3520
WD40-rpts
Query 3521 QGVRSMNSTDIQWSAILSWGYADNILRLKSKQSEPPVNFIQSSQQYQVTSCAWVPDSCQLFTGSKCGVITAYTNRFTSST 3600
WD40-rpts (___________________WD 2__________________)(______
Query 3601 PSEIEMETQIHLYGHTEEITSLFVCKPYSILISVSRDGTCIIWDLNRLCYVQSLAGHKSPVTAVSASETSGDIATVCDSA 3680
WD40-rpts _________________WD 3______________________)(____________________WD 4___________
Query 3681 GGGSDLRLWTVNGDLVGHVHCREIICSVAFSNQPEGVSINVIAGGLENGIVRLWSTWDLKPVREITFPKSNKPIISLTFS 3760
WD40-rpts _________)(____________________WD 5___________________)(___________________WD 6_
Query 3761 CDGHHLYTANSDGTVIAWCRKDQQRLKQPMFYSFLSSYAAG 3801
WD40-rpts __________________)
 6 WD40-repeats found in QUERY=ENSP00000374444 (Len=3801): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 6 635-702 4.44 298.00 0.00599 30.0% -8.35 WD 2: Seg 49 3551-3593 4.60 304.51 0.00489 27.5% 53.88 WD 3: Seg 53 3594-3644 5.67 348.83 0.00124 37.5% 56.60 WD 4: Seg 57 3645-3690 3.46 257.41 0.02095 27.5% 45.94 WD 5: Seg 61 3691-3735 3.06 241.05 0.03458 22.5% 50.56 WD 6: Seg 65 3736-3779 4.92 317.92 0.00323 30.0% 47.72Multiple sequence alignment of 6 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 635-702 AA-----------C---N--IC----TVDSDQLAQLEETLQGNLCDAELSSSLSSPSYRFQG-----ILPS----SGSEDLLWKWDALKAYQNFVFE WD 2 3551-3593 KQ-----------SEPPV--NF----IQSS------------------QQYQVTSCAWVPDS-----CQLF----TGSKCGVIT----------AYT WD 3 3594-3644 NRFTSSTPSEIEME---T--QI----HLYG------------------HTEEITSLFVCKPY-----SILI----SVSRDGTCI----------IWD WD 4 3645-3690 LN-----------R---LCYVQ----SLAG------------------HKSPVTAVSASETS-----GDIATVCDSAGGGSDLR----------LWT WD 5 3691-3735 VN-----------G---D--LV----GHVH------------------CREIICSVAFSNQPEGVSINVIA----GGLENGIVR----------LWS WD 6 3736-3779 TW-----------D---L--KPVREITFPK------------------SNKPIISLTFSCDG-----HHLY----TANSDGTVI----------AWC WD40 Template TG-----------E---C--LR----TLSG------------------HTSGVTSVSFSPDG-----KRLV----SGSEDGTIK----------VWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |