Input parameters:
Query = ENSP00000374250 (Len=160)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000374250, Len=160):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 80
WD40-rpts (__________________WD 1_________________) (_________________WD 2______
Query 81 GSWDGTLRLWDLTTGRLSLDLEIKPSSYGIPWVCANTLSRMRATQSGCLVSASRPTAATLSSSPVAGTSWSRYGTWLTAS 160
WD40-rpts __________) (__________________WD 3_________________)
3 WD40-repeats found in QUERY=ENSP00000374250 (Len=160):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 4-44 8.86 480.65 2.1e-05 32.5% 52.77
WD 2: Seg 5 53-91 10.13 532.97 4.1e-06 45.0% 51.30
WD 3: Seg 9 95-135 4.80 312.97 0.00377 12.5% 33.71
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 4-44 QMTLRGTLK--GHNGWVTQIATTPQFPDMILSASRDKTIIMWK
WD 2 53-91 -GIPQRALR--GHSHFVSDVVISSD-GQFALSGSWDGTLRLWD
WD 3 95-135 -GRLSLDLEIKPSSYGIPWVCANTL-SRMRATQSGCLVSASRP
WD40 Template TGECLRTLS--GHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD