WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000373623    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000373623 (Len=1685)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000373623, Len=1685):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDALESLLDEVALEGLDGLCLPALWSRLETRVPPFPLPLEPCTQEFLWRALATHPGISFYEEPRERPDLQLQDRYEEIDL 80  
WD40-rpts                                                                                      

Query       81 ETGILESRRDPVALEDVYPIHMILENKDGIQGSCRYFKERKNITNDIRTKSLQPRCTMVEAFDRWGKKLICLPGHAVQGL 160 
WD40-rpts                                                                                      

Query      161 DRPGGGSRPEAARLLLLHPGTARPVQQGELQRDLHTTAFKVDAGKLHYHRKILNKNGLITMQSHVIRLPTGAQQHSILLL 240 
WD40-rpts                                                                                      

Query      241 LNRFHVDRRSKYDILMEKLSVMLSTRTNHIETLGKLREELGLCERTFKRLYQYMLNAGLAKVVSLRLQEIHPECGPCKTK 320 
WD40-rpts                                                                                      

Query      321 KGTDVMVRCLKLLKEFKRNDHDDDEDEEVISKTVPPVDIVFERDMLTQTYDLIERRGTKGISQAEIRVAMNVGKLEARML 400 
WD40-rpts                                                                                      

Query      401 CRLLQRFKVVKGFMEDEGRQRTTKYISCVFAEESDLSRQYQREKARSELLTTVSLASMQEESLLPEGEDTFLSESDSEEE 480 
WD40-rpts                                                                                      

Query      481 RSSSKRRGRGSQKDTRASANLRPKTQPHHSTPTKGGWKVVNLHPLKKQPPSFPGAAEERACQSLASRDSLLDTSSVSEPN 560 
WD40-rpts                                                                                      

Query      561 VSFVSHCADSNSGDIAVIEEVRMENPKESSSSLKTGRHSSGQDKPHETYRLLKRRNLIIEAVTNLRLIESLFTIQKMIMD 640 
WD40-rpts                                                                                      

Query      641 QEKQEGVSTKCCKKSIVRLVRNLSEEGLLRLYRTTVIQDGIKKKVDLVVHPSMDQNDPLVRSAIEQVRFRISNSSTANRV 720 
WD40-rpts                                                                                      

Query      721 KTSQPPVPQGEAEEDSQGKEGPSGSGDSQLSASSRSESGRMKKSDNKMGITPLRNYHPIVVPGLGRSLGFLPKMPRLRVV 800 
WD40-rpts                                                                                      

Query      801 HMFLWYLIYGHPASNTVEKPSFISERRTIKQESGRAGVRPSSSGSAWEACSEAPSKGSQDGVTWEAEVELATETVYVDDA 880 
WD40-rpts                                                                                      

Query      881 SWMRYIPPIPVHRDFGFGWALVSDILLCLPLSIFIQIVQVSYKVDNLEEFLNDPLKKHTLIRFLPRPIRQQLLYKRRYIF 960 
WD40-rpts                                                                                      

Query      961 SVVENLQRLCYMGLLQFGPTEKFQDKDQVFIFLKKNAVIVDTTICDPHYNLARSSRPFERRLYVLNSMQDVENYWFDLQC 1040
WD40-rpts                                                                                      

Query     1041 VCLNTPLGVVRCPRVRKNSSTDQGSDEEGSLQKEQESAMDKHNLERKCAMLEYTTGSREVVDEGLIPGDGLGAGSIPAST 1120
WD40-rpts                                                                                      

Query     1121 DTSSATGSGPATSSTRPKRRTLPQRMDVRLQTFLSKRPMPLSARGNSRLNIWGEARVGSELCAGWEEQFEVDREPSLDRN 1200
WD40-rpts                                                                                      

Query     1201 RRVRGGKSQKRKRLKKDPGKKIKRKKKGEFPGEKSKRLRYHDEADQSALQRMTRLRVTWSMQEDGLLVLCRIASNVLNTK 1280
WD40-rpts                                                                                      

Query     1281 VKGPFVTWQVVRDILHATFEESLDKTSHSVGRRARYIVKNPQAYLNYKVCLAEVYQDKALVGDFMNRRGDYDDPKVCANE 1360
WD40-rpts                                                                                      

Query     1361 FKEFVEKLKEKFSSALRNSNLEIPDTLQELFARYRVLAIGDEKDQTRKEDELNSVDDIHFLVLQNLIQSTLALSDSQMKS 1440
WD40-rpts                                                                                      

Query     1441 YQSFQTFRLYREYKDHVLVKAFMECQKRSLVNRRRVNHTLGPKKNRALPFVPMSYQLSQTYYRIFTWRFPSTICTESFQF 1520
WD40-rpts                                                                                      

Query     1521 LDRMRAAGKLDQPDRFSFKDQDNNEPTNDMVAFSLDGPGGNCVAVLTLFSLGLISVDVRIPEQIIVVDSSMVENEVIKSL 1600
WD40-rpts                                         (_________________________WD 1_______________

Query     1601 GKDGSLEDDEDEEDDLDEGVGGKRRSMEVKPAQASHTNYLLMRGYYSPGIVSTRNLNPNDSIVVNSCQMKFQLRCTPVPA 1680
WD40-rpts      _________)                                                                      

Query     1681 RLRPA 1685
WD40-rpts           



1 WD40-repeats found in QUERY=ENSP00000373623 (Len=1685):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 24  1556-1610     2.82  231.06  0.04685       15.0%      9.69
Multiple sequence alignment of 1 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1 1556-1610   DGPGGNCVAVLTLFSLGLISVDVRIPEQIIVVDSSMVENEVIKSLGKDGSLEDDE

   WD40 Template    TGECLRTLSGH----TSGVTSVSFSPDGKRLVSGS-----------EDGTIKVWD


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Last modified: 09 Jan 2019