WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000372513    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000372513 (Len=371)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000372513, Len=371):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFQEVKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGF 80  
WD40-rpts                                                     (_________________WD 1___________

Query       81 MPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILT 160 
WD40-rpts      ______)  (__________________WD 2__________________)(_________________WD 3_______

Query      161 ATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGIFPAKTITYQAVPSEVPNEEPKVATAYRPPALRNK 240 
WD40-rpts      __________)                                                                     

Query      241 PITNSKLHEEEPPQNMKPQSGNDKPLSKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGDPEID 320 
WD40-rpts                                                                                      

Query      321 KKIKNLKKKLKAIEQLKEQAATGKQLEKNQLEKIQKETALLQELEDLELGI 371 
WD40-rpts                                                         



3 WD40-repeats found in QUERY=ENSP00000372513 (Len=371):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    48-87       3.61  263.64  0.01730       10.0%     50.21
  WD 2:  Seg 10    90-131      3.54  260.74  0.01891       30.0%     36.54
  WD 3:  Seg 14   132-171      3.62  264.32  0.01694       15.0%     49.58
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   48-87     NGESAVVQLPKNGPIYDVVWNSSSTEFCA---VYGFMPAKATI
   WD 2   90-131    -LKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWD
   WD 3  132-171    VKNYKLISKPVASDSTYFAWCPDGEHILT---ATCAPRLRVNN

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVS---GSEDGTIKVWD


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Last modified: 09 Jan 2019