Input parameters:
Query = ENSP00000372042 (Len=447)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000372042, Len=447):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGEDTDTRKINHSFLRDHSYVTEADIISTVEFNHTGELLATGDKGGRVVIFQREPESKNAPHSQGEYDVYSTFQSHEPEF 80
WD40-rpts (__________________WD 1__________________) (_____
Query 81 DYLKSLEIEEKINKIKWLPQQNAAHSLLSTNDKTIKLWKITERDKRPEGYNLKDEEGKLKDLSTVTSLQVPVLKPMDLMV 160
WD40-rpts _______________WD 2___________________) (________________WD 3_____________
Query 161 EVSPRRIFANGHTYHINSISVNSDCETYMSADDLRINLWHLAITDRSFNIVDIKPANMEDLTEVITASEFHPHHCNLFVY 240
WD40-rpts ___)(_______________WD 4_______________) (_________________WD 5______
Query 241 SSSKGSLRLCDMRAAALCDKHSKLFEEPEDPSNRSFFSEIISSVSDVKFSHSGRYMLTRDYLTVKVWDLNMEARPIETYQ 320
WD40-rpts __________) (________________WD 6________________) (_______
Query 321 VHDYLRSKLCSLYENDCIFDKFECAWNGSDSVIMTGAYNNFFRMFDRNTKRDVTLEASRESSKPRAVLKPRRVCVGGKRR 400
WD40-rpts _________________WD 7________________________) (_________________WD 8__________
Query 401 RDDISVDSLDFTKKILHTAWHPAENIIAIAATNNLYIFQDKVNSDMH 447
WD40-rpts ______)
8 WD40-repeats found in QUERY=ENSP00000372042 (Len=447):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 11-52 7.60 428.51 0.00010 20.0% 41.63
WD 2: Seg 6 75-119 4.51 300.95 0.00546 17.5% 44.11
WD 3: Seg 11 127-164 5.06 323.67 0.00270 12.5% 13.48
WD 4: Seg 13 165-200 5.95 360.26 0.00087 25.0% 45.56
WD 5: Seg 18 213-251 6.00 362.71 0.00080 20.0% 39.34
WD 6: Seg 21 271-308 6.32 375.88 0.00053 30.0% 41.06
WD 7: Seg 24 313-366 4.86 315.41 0.00349 10.0% 47.91
WD 8: Seg 28 369-407 5.45 339.63 0.00165 12.5% 20.17
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 11-52 NHSFLRDHSY---VTEAD---------------IISTVEFNH--TGELLATGDKGGRVVIFQ
WD 2 75-119 SHEPEF--DYLKSLEIEE---------------KINKIKWLPQQNAAHSLLSTNDKTIKLWK
WD 3 127-164 --PEGY--NL---KDEEG---------------KLKDLSTVT--SLQVPVLKPMDLMVEVSP
WD 4 165-200 ---RRI--FA---NGHTY---------------HINSISVNS--DCETYMS-ADDLRINLWH
WD 5 213-251 IKP--A--NM---EDLTE---------------VITASEFHP-HHCNLFVYSSSKGSLRLCD
WD 6 271-308 -PSNRS--FF---SEIIS---------------SVSDVKFSH--SGRYMLTRD-YLTVKVWD
WD 7 313-366 -ARPIE--TY---QVHDYLRSKLCSLYENDCIFDKFECAWNG--SDSVIMTGAYNNFFRMFD
WD 8 369-407 -TKRDV--TL---EASRE---------------SSKPRAVLK--PRRVCVGGKRRRDDISVD
WD40 Template TGECLR--TL---SGHTS---------------GVTSVSFSP--DGKRLVSGSEDGTIKVWD