WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000372042    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000372042 (Len=447)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000372042, Len=447):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGEDTDTRKINHSFLRDHSYVTEADIISTVEFNHTGELLATGDKGGRVVIFQREPESKNAPHSQGEYDVYSTFQSHEPEF 80  
WD40-rpts                (__________________WD 1__________________)                      (_____

Query       81 DYLKSLEIEEKINKIKWLPQQNAAHSLLSTNDKTIKLWKITERDKRPEGYNLKDEEGKLKDLSTVTSLQVPVLKPMDLMV 160 
WD40-rpts      _______________WD 2___________________)       (________________WD 3_____________

Query      161 EVSPRRIFANGHTYHINSISVNSDCETYMSADDLRINLWHLAITDRSFNIVDIKPANMEDLTEVITASEFHPHHCNLFVY 240 
WD40-rpts      ___)(_______________WD 4_______________)            (_________________WD 5______

Query      241 SSSKGSLRLCDMRAAALCDKHSKLFEEPEDPSNRSFFSEIISSVSDVKFSHSGRYMLTRDYLTVKVWDLNMEARPIETYQ 320 
WD40-rpts      __________)                   (________________WD 6________________)    (_______

Query      321 VHDYLRSKLCSLYENDCIFDKFECAWNGSDSVIMTGAYNNFFRMFDRNTKRDVTLEASRESSKPRAVLKPRRVCVGGKRR 400 
WD40-rpts      _________________WD 7________________________)  (_________________WD 8__________

Query      401 RDDISVDSLDFTKKILHTAWHPAENIIAIAATNNLYIFQDKVNSDMH 447 
WD40-rpts      ______)                                        



8 WD40-repeats found in QUERY=ENSP00000372042 (Len=447):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    11-52       7.60  428.51  0.00010       20.0%     41.63
  WD 2:  Seg  6    75-119      4.51  300.95  0.00546       17.5%     44.11
  WD 3:  Seg 11   127-164      5.06  323.67  0.00270       12.5%     13.48
  WD 4:  Seg 13   165-200      5.95  360.26  0.00087       25.0%     45.56
  WD 5:  Seg 18   213-251      6.00  362.71  0.00080       20.0%     39.34
  WD 6:  Seg 21   271-308      6.32  375.88  0.00053       30.0%     41.06
  WD 7:  Seg 24   313-366      4.86  315.41  0.00349       10.0%     47.91
  WD 8:  Seg 28   369-407      5.45  339.63  0.00165       12.5%     20.17
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   11-52     NHSFLRDHSY---VTEAD---------------IISTVEFNH--TGELLATGDKGGRVVIFQ
   WD 2   75-119    SHEPEF--DYLKSLEIEE---------------KINKIKWLPQQNAAHSLLSTNDKTIKLWK
   WD 3  127-164    --PEGY--NL---KDEEG---------------KLKDLSTVT--SLQVPVLKPMDLMVEVSP
   WD 4  165-200    ---RRI--FA---NGHTY---------------HINSISVNS--DCETYMS-ADDLRINLWH
   WD 5  213-251    IKP--A--NM---EDLTE---------------VITASEFHP-HHCNLFVYSSSKGSLRLCD
   WD 6  271-308    -PSNRS--FF---SEIIS---------------SVSDVKFSH--SGRYMLTRD-YLTVKVWD
   WD 7  313-366    -ARPIE--TY---QVHDYLRSKLCSLYENDCIFDKFECAWNG--SDSVIMTGAYNNFFRMFD
   WD 8  369-407    -TKRDV--TL---EASRE---------------SSKPRAVLK--PRRVCVGGKRRRDDISVD

   WD40 Template    TGECLR--TL---SGHTS---------------GVTSVSFSP--DGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019