Input parameters:
Query = ENSP00000371821 (Len=425)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000371821, Len=425):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNLASQSGEAGAGQLLFANFNQDNTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPRK 80
WD40-rpts (_________________WD 1________________) (___________________WD 2_______________
Query 81 LKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGS 160
WD40-rpts ____)(__________________WD 3_________________) (__________________WD 4________
Query 161 ATIGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM 240
WD40-rpts _________) (_________________WD 5_________________)(____________________WD 6__
Query 241 DGMFLSASSNTETVHIFKLETVKEKPPEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGRAFATVRLPFCGHKNICSLAT 320
WD40-rpts _________________) (__________________WD
Query 321 IQKIPRLLVGAADGYLYMYNLDPQEGGECALMKQHRLDGSLETTNEILDSASHDCPLVTQTYGAAAGKAYTDDLGAVGGA 400
WD40-rpts 7__________________) (_________________WD 8_______
Query 401 CLEDEASALRLDEDSEHPPMILRTD 425
WD40-rpts _________)
8 WD40-repeats found in QUERY=ENSP00000371821 (Len=425):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-39 6.77 394.26 0.00030 15.0% 44.90
WD 2: Seg 4 42-85 7.24 413.89 0.00016 17.5% 45.58
WD 3: Seg 8 86-126 5.26 332.03 0.00208 5.0% 22.36
WD 4: Seg 12 130-170 6.49 382.60 0.00043 20.0% 46.36
WD 5: Seg 16 174-213 8.25 455.34 4.5e-05 27.5% 54.34
WD 6: Seg 20 214-258 7.43 421.41 0.00013 25.0% 50.14
WD 7: Seg 27 299-340 6.75 393.47 0.00031 17.5% 57.67
WD 8: Seg 33 372-410 6.55 385.34 0.00040 2.5% 37.01
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-39 MN--LA-----SQSG----E-AGAGQLLFANFNQDNTSLAVGS-K--SG-YKFFS
WD 2 42-85 SV--DK-----LEQIYECTD-TEDVCIVERLFSSSLVAIVSLKAP--RK-LKVCH
WD 3 86-126 FK--KG-----TEIC----NYSYSNTILAVKLNRQRLIVCLEESL--YI-HNIRD
WD 4 130-170 -L--HT-----IRET----P-PNPAGLCALSINNDNCYLAYPGSATIGE-VQVFD
WD 5 174-213 -L--RA-----ANMI----P-AHDSPLAALAFDASGTKLATASEK--GTVIRVFS
WD 6 214-258 IP--EGQKLFEFRRG----V-KRCVSICSLAFSMDGMFLSASSNT--ET-VHIFK
WD 7 299-340 GRAFAT-----VRLP----F-CGHKNICSLATIQKIPRLLVGAAD--GY-LYMYN
WD 8 372-410 -S--HD-----CPLV----T-QTYGAAAGKAYTDDLGAVGGACLE--DE-ASALR
WD40 Template TG--EC-----LRTL----S-GHTSGVTSVSFSPDGKRLVSGSED--GT-IKVWD