WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000371821    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000371821 (Len=425)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000371821, Len=425):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNLASQSGEAGAGQLLFANFNQDNTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPRK 80  
WD40-rpts      (_________________WD 1________________)  (___________________WD 2_______________

Query       81 LKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGS 160 
WD40-rpts      ____)(__________________WD 3_________________)   (__________________WD 4________

Query      161 ATIGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM 240 
WD40-rpts      _________)   (_________________WD 5_________________)(____________________WD 6__

Query      241 DGMFLSASSNTETVHIFKLETVKEKPPEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGRAFATVRLPFCGHKNICSLAT 320 
WD40-rpts      _________________)                                        (__________________WD 

Query      321 IQKIPRLLVGAADGYLYMYNLDPQEGGECALMKQHRLDGSLETTNEILDSASHDCPLVTQTYGAAAGKAYTDDLGAVGGA 400 
WD40-rpts      7__________________)                               (_________________WD 8_______

Query      401 CLEDEASALRLDEDSEHPPMILRTD 425 
WD40-rpts      _________)               



8 WD40-repeats found in QUERY=ENSP00000371821 (Len=425):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       6.77  394.26  0.00030       15.0%     44.90
  WD 2:  Seg  4    42-85       7.24  413.89  0.00016       17.5%     45.58
  WD 3:  Seg  8    86-126      5.26  332.03  0.00208        5.0%     22.36
  WD 4:  Seg 12   130-170      6.49  382.60  0.00043       20.0%     46.36
  WD 5:  Seg 16   174-213      8.25  455.34  4.5e-05       27.5%     54.34
  WD 6:  Seg 20   214-258      7.43  421.41  0.00013       25.0%     50.14
  WD 7:  Seg 27   299-340      6.75  393.47  0.00031       17.5%     57.67
  WD 8:  Seg 33   372-410      6.55  385.34  0.00040        2.5%     37.01
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-39     MN--LA-----SQSG----E-AGAGQLLFANFNQDNTSLAVGS-K--SG-YKFFS
   WD 2   42-85     SV--DK-----LEQIYECTD-TEDVCIVERLFSSSLVAIVSLKAP--RK-LKVCH
   WD 3   86-126    FK--KG-----TEIC----NYSYSNTILAVKLNRQRLIVCLEESL--YI-HNIRD
   WD 4  130-170    -L--HT-----IRET----P-PNPAGLCALSINNDNCYLAYPGSATIGE-VQVFD
   WD 5  174-213    -L--RA-----ANMI----P-AHDSPLAALAFDASGTKLATASEK--GTVIRVFS
   WD 6  214-258    IP--EGQKLFEFRRG----V-KRCVSICSLAFSMDGMFLSASSNT--ET-VHIFK
   WD 7  299-340    GRAFAT-----VRLP----F-CGHKNICSLATIQKIPRLLVGAAD--GY-LYMYN
   WD 8  372-410    -S--HD-----CPLV----T-QTYGAAAGKAYTDDLGAVGGACLE--DE-ASALR

   WD40 Template    TG--EC-----LRTL----S-GHTSGVTSVSFSPDGKRLVSGSED--GT-IKVWD


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Last modified: 09 Jan 2019