WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000370113    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000370113 (Len=447)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000370113, Len=447):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAGAGGGNDIQWCFSQVKGAVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSH 80  
WD40-rpts                      (_________________WD 1_________________)                    (___

Query       81 EPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPM 160 
WD40-rpts      __________________WD 2____________________)                                     

Query      161 DLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN 240 
WD40-rpts           (_________________WD 3________________)            (_________________WD 4__

Query      241 TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKIWDLNMENRPV 320 
WD40-rpts      ______________)                   (________________WD 5________________)        

Query      321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCAS 400 
WD40-rpts            (___________________WD 6___________________)  (_________________WD 7______

Query      401 GKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQDKVN 447 
WD40-rpts      __________)                                    



7 WD40-repeats found in QUERY=ENSP00000370113 (Len=447):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    17-56       8.65  472.13  2.7e-05       15.0%     36.89
  WD 2:  Seg  6    77-123      4.17  286.84  0.00846       15.0%     41.45
  WD 3:  Seg 10   166-204      7.56  426.78  0.00011       22.5%     46.78
  WD 4:  Seg 15   217-255      6.26  373.37  0.00058       25.0%     38.85
  WD 5:  Seg 18   275-312      6.36  377.36  0.00051       22.5%     42.86
  WD 6:  Seg 22   327-370      5.22  330.23  0.00220       10.0%     41.81
  WD 7:  Seg 25   373-411      4.79  312.68  0.00380       15.0%     25.24
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   17-56     VKGAVDDDV-----AEAD----IISTVEFNH--SGELLATGDKGGRVVIFQ
   WD 2   77-123    FQSHEPEFDYLKSLEIEE----KINKIRWLPQKNAAQFLLSTNDKTIKLWK
   WD 3  166-204    ASPRRIFAN-----AHTY----HINSISINS--DYETYLS-ADDLRINLWH
   WD 4  217-255    IKP--ANME-----ELTE----VITAAEFHP-NSCNTFVYSSSKGTIRLCD
   WD 5  275-312    -PSNRSFFS-----EIIS----SISDVKFSH--SGRYMMTRD-YLSVKIWD
   WD 6  327-370    EYLRSKLCS-----LYENDCIFDKFECCWNG--SDSVVMTGSYNNFFRMFD
   WD 7  373-411    -TKRDITLE-----ASRE----NNKPRTVLK--PRKVCASGKRKKDEISVD

   WD40 Template    TGECLRTLS-----GHTS----GVTSVSFSP--DGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019