Input parameters:
Query = ENSP00000370113 (Len=447)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000370113, Len=447):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAGAGGGNDIQWCFSQVKGAVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSH 80
WD40-rpts (_________________WD 1_________________) (___
Query 81 EPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPM 160
WD40-rpts __________________WD 2____________________)
Query 161 DLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN 240
WD40-rpts (_________________WD 3________________) (_________________WD 4__
Query 241 TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKIWDLNMENRPV 320
WD40-rpts ______________) (________________WD 5________________)
Query 321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCAS 400
WD40-rpts (___________________WD 6___________________) (_________________WD 7______
Query 401 GKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQDKVN 447
WD40-rpts __________)
7 WD40-repeats found in QUERY=ENSP00000370113 (Len=447):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 17-56 8.65 472.13 2.7e-05 15.0% 36.89
WD 2: Seg 6 77-123 4.17 286.84 0.00846 15.0% 41.45
WD 3: Seg 10 166-204 7.56 426.78 0.00011 22.5% 46.78
WD 4: Seg 15 217-255 6.26 373.37 0.00058 25.0% 38.85
WD 5: Seg 18 275-312 6.36 377.36 0.00051 22.5% 42.86
WD 6: Seg 22 327-370 5.22 330.23 0.00220 10.0% 41.81
WD 7: Seg 25 373-411 4.79 312.68 0.00380 15.0% 25.24
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 17-56 VKGAVDDDV-----AEAD----IISTVEFNH--SGELLATGDKGGRVVIFQ
WD 2 77-123 FQSHEPEFDYLKSLEIEE----KINKIRWLPQKNAAQFLLSTNDKTIKLWK
WD 3 166-204 ASPRRIFAN-----AHTY----HINSISINS--DYETYLS-ADDLRINLWH
WD 4 217-255 IKP--ANME-----ELTE----VITAAEFHP-NSCNTFVYSSSKGTIRLCD
WD 5 275-312 -PSNRSFFS-----EIIS----SISDVKFSH--SGRYMMTRD-YLSVKIWD
WD 6 327-370 EYLRSKLCS-----LYENDCIFDKFECCWNG--SDSVVMTGSYNNFFRMFD
WD 7 373-411 -TKRDITLE-----ASRE----NNKPRTVLK--PRKVCASGKRKKDEISVD
WD40 Template TGECLRTLS-----GHTS----GVTSVSFSP--DGKRLVSGSEDGTIKVWD