WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000369425    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000369425 (Len=410)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000369425, Len=410):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKI 80  
WD40-rpts                                          (_______________WD 1______________)         

Query       81 ECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLS 160 
WD40-rpts            (_____________WD 2_____________)             (_________________WD 3_______

Query      161 ASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAE 240 
WD40-rpts      __________)         (__________________WD 4_________________)      (____________

Query      241 VNCLSFNPYSEFILATGSADKVCDSFLVSVCQEMKSRDSSVKLYQTRGSTIEKNVLYVVLHGDAHRVHWSPHNETILASS 320 
WD40-rpts      _____WD 5_________________)                       (_________________WD 6________

Query      321 GTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDV 400 
WD40-rpts      _________)                 (_________________WD 7_________________)             

Query      401 TTSELEGQGS 410 
WD40-rpts                



7 WD40-repeats found in QUERY=ENSP00000369425 (Len=410):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    37-71       3.05  240.80  0.03484       15.0%      8.44
  WD 2:  Seg  5    87-118      3.96  278.43  0.01096       12.5%     45.67
  WD 3:  Seg  8   132-171      6.07  365.53  0.00074       27.5%     51.16
  WD 4:  Seg 12   181-221      8.11  449.81  5.4e-05       22.5%     44.43
  WD 5:  Seg 15   228-267      6.88  398.66  0.00026       25.0%     48.96
  WD 6:  Seg 20   291-330      6.38  378.37  0.00050       25.0%     51.99
  WD 7:  Seg 24   348-387      6.07  365.33  0.00074       30.0%     55.56
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   37-71     TSDEQNHLV-----VARVHIPND-DA-Q-F-DASHCDSDKGEFG
   WD 2   87-118    ---------NHEGEVNRARYMPQ-NP-H-IIATKTPSSDVLVFD
   WD 3  132-171    -CNPDLRLRGHQKEGYGLSWNSNLSG-H-L-LSASDDHTVCLWD
   WD 4  181-221    IVDAKAIFTGHSAVVEDVAWHLL-HE-S-LFGSVADDQKLMIWD
   WD 5  228-267    -SKPSHLVDAHTAEVNCLSFNPY-SEFI-L-ATGSADKVCDSFL
   WD 6  291-330    -IEKNVLYVVLHGDAHRVHWSPH-NE-TIL-ASSGTDRRLNVWD
   WD 7  348-387    -PELLFIHGGHTAKISDFSWNPN-EPWV-I-CSVSEDNIMQIWQ

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD-GK-R-L-VSGSEDGTIKVWD


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Last modified: 09 Jan 2019