Input parameters:
Query = ENSP00000369254 (Len=524)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000369254, Len=524):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MFVNSNGYNLGVREDEVVVNDVDLPPWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHYLTY 80
WD40-rpts
Query 81 EGSVNLDSITDPVLREIPEAYFIRDPHTFLLTKDFIKAMEAQIQNFGQTPSQLLIEPHPPRSSAMHLCFLPQSPLMFKDQ 160
WD40-rpts
Query 161 MQQDVIMVLKFPSNSPVTHVAANTLPHLTIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSG 240
WD40-rpts (__________________WD 1__________________)
Query 241 VNKRQITDLVDQSIQINAHCFVVTADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSG 320
WD40-rpts (__________________WD 2__________________) (___________________WD 3_________
Query 321 SRDATLLLWYWSGRHHIIGDNPNSSDYPAPRAVLTGHDHEVVCVSVCAELGLVISGAKEGPCLVHTITGDLLRALEGPEN 400
WD40-rpts _________) (_________________WD 4________________) (___________
Query 401 CLFPRLISVSSEGHCIIYYERGRFSNFSINGKLLAQMEINDSTRAILLSSDGQNLVTGGDNGVVEVWQACDFKQLYIYPG 480
WD40-rpts _______WD 5_________________)(_________________WD 6________________) (________
Query 481 CDAGIRAMDLSHDQRTLITGMASGSIVAFNIDFNRWHYEHQNRY 524
WD40-rpts _________WD 7________________)
7 WD40-repeats found in QUERY=ENSP00000369254 (Len=524):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 6 198-239 4.53 301.95 0.00530 10.0% 21.83
WD 2: Seg 9 243-284 5.52 342.57 0.00150 15.0% 50.14
WD 3: Seg 13 288-330 8.05 447.35 5.8e-05 32.5% 55.05
WD 4: Seg 18 348-386 7.85 439.07 7.5e-05 25.0% 51.10
WD 5: Seg 22 389-429 5.45 339.90 0.00163 20.0% 44.51
WD 6: Seg 26 430-468 8.26 455.66 4.5e-05 27.5% 55.55
WD 7: Seg 30 472-510 8.13 450.45 5.3e-05 22.5% 56.94
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 198-239 CSRLFAVNRWHNTVGLRGA--PGY---SL----DQAHHLPIEMDPLIANNS
WD 2 243-284 -KR--QITDLVDQSIQINA--HCFVVTAD----NRYILICGFWDKSFRVYS
WD 3 288-330 -GK--LTQIVFGHWDVVTC--LAR---SESYIGGDCYIVSGSRDATLLLWY
WD 4 348-386 -PA--PRAVLTGHDHEVVC--VSV---CA----ELGLVISGAKEGPCLVHT
WD 5 389-429 -GD--LLRALEGPENCLFPRLISV---SS----EGHCIIYYERGRFSNFSI
WD 6 430-468 NGK--LL-AQMEINDSTRA--ILL---SS----DGQNLVTGGDNGVVEVWQ
WD 7 472-510 -FK--QLYIYPGCDAGIRA--MDL---SH----DQRTLITGMASGSIVAFN
WD40 Template TGE--CLRTLSGHTSGVTS--VSF---SP----DGKRLVSGSEDGTIKVWD