WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000368887    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000368887 (Len=392)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000368887, Len=392):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MELVAGCYEQVLFGFAVHPEPEACGDHEQWTLVADFTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKIEHGALVH 80  
WD40-rpts      (__________WD 1__________)   (_________________WD 2________________)   (________

Query       81 HSGTITCLKFYGNRHLISGAEDGLICIWDAKKWECLKSIKAHKGQVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFI 160 
WD40-rpts      ________WD 3________________)   (_________________WD 4________________)(________

Query      161 KNIKQNAHIVEWSPRGEQYVVIIQNKIDIYQLDTASISGTITNEKRISSVKFLSESVLAVAGDEEVIRFFDCDSLVCLCE 240 
WD40-rpts      _________WD 5_________________)   (________________WD 6_______________)   (_____

Query      241 FKAHENRVKDMFSFEIPEHHVIVSASSDGFIKMWKLKQDKKVPPSLLCEINTNARLTCLGVWLDKVADMKESLPPAAEPS 320 
WD40-rpts      _____________WD 7_________________)                                             

Query      321 PVSKEQSKIGKKEPGDTVHKEEKRSKPNTKKRGLTGDSKKATKESGLISTKKRKMVEMLEKKRKKKKIKTMQ 392 
WD40-rpts                                                                              



7 WD40-repeats found in QUERY=ENSP00000368887 (Len=392):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-26       3.12  243.56  0.03203        5.0%     20.35
  WD 2:  Seg  3    30-68       8.33  458.84  4.1e-05       20.0%     53.19
  WD 3:  Seg  7    72-109      8.21  453.75  4.8e-05       32.5%     55.16
  WD 4:  Seg 11   113-151     10.23  537.41  3.6e-06       35.0%     56.76
  WD 5:  Seg 15   152-191      6.22  371.50  0.00061       17.5%     56.65
  WD 6:  Seg 19   195-231      5.85  356.36  0.00098       17.5%     52.82
  WD 7:  Seg 23   235-275      8.21  453.95  4.7e-05       32.5%     56.97
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-26     ---------------MELVAG--CYEQVLFGFAVHPEPEACGD
   WD 2   30-68     -WT-LVADFTHHAHTASLSAV--AVNSRFVVTGSKDETIHIYD
   WD 3   72-109    -KI-EHGALVHHSGTITCLKF--YGNR-HLISGAEDGLICIWD
   WD 4  113-151    -WE-CLKSIKAHKGQVTFLSI--HPSGKLALSVGTDKTLRTWN
   WD 5  152-191    LVEGRSAFIKNIKQNAHIVEW--SPRGEQYVVIIQN-KIDIYQ
   WD 6  195-231    -AS-ISGTITNE-KRISSVKF--LSESV-LAVAGDEEVIRFFD
   WD 7  235-275    -LV-CLCEFKAHENRVKDMFSFEIPEHHVIVSASSDGFIKMWK

   WD40 Template    TGE-CLRTLSGHTSGVTSVSF--SPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019