Input parameters:
Query = ENSP00000368887 (Len=392)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000368887, Len=392):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MELVAGCYEQVLFGFAVHPEPEACGDHEQWTLVADFTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKIEHGALVH 80
WD40-rpts (__________WD 1__________) (_________________WD 2________________) (________
Query 81 HSGTITCLKFYGNRHLISGAEDGLICIWDAKKWECLKSIKAHKGQVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFI 160
WD40-rpts ________WD 3________________) (_________________WD 4________________)(________
Query 161 KNIKQNAHIVEWSPRGEQYVVIIQNKIDIYQLDTASISGTITNEKRISSVKFLSESVLAVAGDEEVIRFFDCDSLVCLCE 240
WD40-rpts _________WD 5_________________) (________________WD 6_______________) (_____
Query 241 FKAHENRVKDMFSFEIPEHHVIVSASSDGFIKMWKLKQDKKVPPSLLCEINTNARLTCLGVWLDKVADMKESLPPAAEPS 320
WD40-rpts _____________WD 7_________________)
Query 321 PVSKEQSKIGKKEPGDTVHKEEKRSKPNTKKRGLTGDSKKATKESGLISTKKRKMVEMLEKKRKKKKIKTMQ 392
WD40-rpts
7 WD40-repeats found in QUERY=ENSP00000368887 (Len=392):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-26 3.12 243.56 0.03203 5.0% 20.35
WD 2: Seg 3 30-68 8.33 458.84 4.1e-05 20.0% 53.19
WD 3: Seg 7 72-109 8.21 453.75 4.8e-05 32.5% 55.16
WD 4: Seg 11 113-151 10.23 537.41 3.6e-06 35.0% 56.76
WD 5: Seg 15 152-191 6.22 371.50 0.00061 17.5% 56.65
WD 6: Seg 19 195-231 5.85 356.36 0.00098 17.5% 52.82
WD 7: Seg 23 235-275 8.21 453.95 4.7e-05 32.5% 56.97
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-26 ---------------MELVAG--CYEQVLFGFAVHPEPEACGD
WD 2 30-68 -WT-LVADFTHHAHTASLSAV--AVNSRFVVTGSKDETIHIYD
WD 3 72-109 -KI-EHGALVHHSGTITCLKF--YGNR-HLISGAEDGLICIWD
WD 4 113-151 -WE-CLKSIKAHKGQVTFLSI--HPSGKLALSVGTDKTLRTWN
WD 5 152-191 LVEGRSAFIKNIKQNAHIVEW--SPRGEQYVVIIQN-KIDIYQ
WD 6 195-231 -AS-ISGTITNE-KRISSVKF--LSESV-LAVAGDEEVIRFFD
WD 7 235-275 -LV-CLCEFKAHENRVKDMFSFEIPEHHVIVSASSDGFIKMWK
WD40 Template TGE-CLRTLSGHTSGVTSVSF--SPDGKRLVSGSEDGTIKVWD