WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000368809    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000368809 (Len=1202)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000368809, Len=1202):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNFEGLDPGLAEYAPAMHSALDPVLDAHLNPSLLQNVELDPEGVALEALPVQESVHIMEGVYSELHSVVAEVGVPVSVSH 80  
WD40-rpts                       (__________________WD 1__________________)         (___________

Query       81 FDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGSDDIRQIQSLENGILFLTKNNLKYMARGGLIIFDYLLDENEDMHS 160 
WD40-rpts      ___WD 2_____________)                                                           

Query      161 LLLTDSSTLLVGGLQNHIIEIDLNTVQETQKYAVETPGVTIMRQTNRFFFCGHTSGKVSLRDLRTFKVEHEFDAFSGSLS 240 
WD40-rpts                               (________________WD 3_______________)   (______________

Query      241 DFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRLAIISQSGQCQFCEPTGLANP 320 
WD40-rpts      ______WD 4____________________)                                                (

Query      321 ADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDSPEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPLSLIPV 400 
WD40-rpts      _________________WD 5________________)                                          

Query      401 PLTTDTLLSDWPAANSAPAPRRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDSEFDSFSQVTESPVGREE 480 
WD40-rpts                                                                                      

Query      481 EPHLHMVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEPVRCLIQNHLCQKEFCLACEL 560 
WD40-rpts                                                                                      

Query      561 GFLFHMLDLSRGDPCQGNNFLRAFRTIPEASALGLILADSDEASGKGNLARLIQRWNRFILTQLHQDMQELEIPQAYRGA 640 
WD40-rpts                                                                                      

Query      641 GGSSFCSSGDSVIGQLFSCEMENCSLCRCGSETVRASSTLLFTLSYPDGSKSDKTGKNYDFAQVLKRSICLDQNTQAWCD 720 
WD40-rpts                                                                                      

Query      721 TCEKYQPTIQTRNIRHLPDILVINCEVNSSKEADFWRMQAEVAFKMAVKKHGGEISKNKEFALADWKELGSPEGVLVCPS 800 
WD40-rpts                                                                                      

Query      801 IEELKNVWLPFSIRMKMTKNKGLDVCNWTDGDEMQWGPARAEEEHGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQ 880 
WD40-rpts                                                                                      

Query      881 RKEGVTHQQWYLFNDFLIEPIDKHEAVQFDMNWKVPAILYYVKRNLNSRYNLNIKNPIEASVLLAEASLARKQRKTHTTF 960 
WD40-rpts                                                                                      

Query      961 IPLMLNEMPQIGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNEGIPFIDDYISTQEQVVDYLT 1040
WD40-rpts                                                                                      

Query     1041 QYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFL 1120
WD40-rpts                                                                                      

Query     1121 AWYFLDLKIQGETHDSIEDARTALQLYRKYLELSKNGTEPESFHKVLKGLYEKGRKMDWKVPEPEGQTSPKNAAVFSSVL 1200
WD40-rpts                                                                                      

Query     1201 AL 1202
WD40-rpts        



5 WD40-repeats found in QUERY=ENSP00000368809 (Len=1202):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    18-59       2.91  234.83  0.04179       17.5%      8.72
  WD 2:  Seg  3    69-101      2.98  237.58  0.03844       15.0%     43.41
  WD 3:  Seg 14   186-222      3.06  241.07  0.03456       17.5%     51.41
  WD 4:  Seg 18   226-271      3.26  249.13  0.02701       15.0%     31.39
  WD 5:  Seg 25   320-358      4.12  284.73  0.00903       12.5%     47.92
Multiple sequence alignment of 5 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   18-59     HSALDPVLDAHLNPSLLQNVELDPE-------GVALEALPVQESVHIME
   WD 2   69-101    -------VAEVG--VPVSVSHFDLH-------EEMLWVGSHGGHATSFF
   WD 3  186-222    -VQETQKYAVET--PGVTIMR--QT-------NRFFFCGHTSGKVSLRD
   WD 4  226-271    -FKVEHEFDAFS--GSLSDFDVHGNLLAACGFSSRLTGLACDRFLKVYD
   WD 5  320-358    -PADIFHVNPVG--PLLMTFDVSAS-------KQALAFGDSEGCVHLWT

   WD40 Template    TGECLRTLSGHT--SGVTSVSFSPD-------GKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019