WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000368513    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000368513 (Len=731)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000368513, Len=731):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDEQAGPGVFFSNNHPGAGGAKGLGPLAGAARAQYSLPGILHFLQHEWARFEVERAQWEVERAELQAQIAFLQGERKGQE 80  
WD40-rpts                                                                                      

Query       81 NLKKDLVRRIKMLEYALKQERAKYHKLKYGTELNQGDMKPPSYDSDEGNETEVQPQQNSQLMWKQGRQLLRQYLQEVGYT 160 
WD40-rpts                                                                                      

Query      161 DTILDVKSKRVRALLGFSSDVTDREDDKNQDSVVNGTEAEVKETAMIAKSELTDSASVLDNFKFLESAAADFSDEDEDDD 240 
WD40-rpts                                                                                      

Query      241 VDGREKSVIDTSTIVRKKALPDSGEDRDTKEALKEFDFLVTSEEGDNESRSAGDGTDWGPNRSKLQDMLANLRDVDELPS 320 
WD40-rpts                                                                                      

Query      321 LQPSVGSPSRPSSSRLPEHEINRADEVEALTFPPSSGKSFIMGADEALESELGLGELAGLTVANEADSLTYDIANNKDAL 400 
WD40-rpts                                                 (__________________WD 1______________

Query      401 RKTWNPKFTLRSHFDGIRALAFHPIEPVLITASEDHTLKMWNLQKTAPAKKSTSLDVEPIYTFRAHKGPVLCVVMSSNGE 480 
WD40-rpts      ____)________________WD 2________________)                  (_______________WD 3

Query      481 QCYSGGTDGLIQGWNTTNPNIDPYDSYDPSVLRGPLLGHTDAVWGLAYSAAHQRLLSCSADGTLRLWNTTEVAPALSVFN 560 
WD40-rpts      ______________)              (_________________WD 4________________)   (________

Query      561 DTKELGIPASVDLVSSDPSHMVASFSKGYTSIFNMETQQRILTLESNVDTTANSSCQINRVISHPTLPISITAHEDRHIK 640 
WD40-rpts      ___________WD 5__________________)          (_________________WD 6______________

Query      641 FYDNNTGKLIHSMVAHLEAVTSLAVDPNGLYLMSGSHDCSIRLWNLESKTCIQEFTAHRKKFEESIHDVAFHPSKCYIAS 720 
WD40-rpts      __)   (_________________WD 7________________)   (___________________WD 8________

Query      721 AGADALAKVFV 731 
WD40-rpts      __________)



8 WD40-repeats found in QUERY=ENSP00000368513 (Len=731):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   364-405      7.01  404.16  0.00022       20.0%     39.96
  WD 2:  Seg  7   404-442      9.20  494.66  1.3e-05       32.5%     46.35
  WD 3:  Seg 10   461-495      8.40  461.81  3.7e-05       30.0%     48.53
  WD 4:  Seg 13   510-548      8.91  482.81  1.9e-05       35.0%     47.40
  WD 5:  Seg 16   552-594      5.83  355.60  0.00100       12.5%     45.73
  WD 6:  Seg 21   605-643      6.84  397.37  0.00027       20.0%     41.60
  WD 7:  Seg 24   647-685     10.12  532.56  4.1e-06       35.0%     56.12
  WD 8:  Seg 28   689-731      6.90  399.74  0.00026       22.5%     49.40
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  364-405    ADEALESELGLGE----LAGLTVAN----EADSLTYDIANNKDALRKTWN
   WD 2  404-442    -WNPKFTL--RSH----FDGIRALA----FHPIEPVLITASEDHTLKMWN
   WD 3  461-495    -----YTF--RAH----KGPVLCVV----MSSNGEQCYSGGTDGLIQGWN
   WD 4  510-548    -SVLRGPL--LGH----TDAVWGLA----YSAAHQRLLSCSADGTLRLWN
   WD 5  552-594    -VAPALSV--FND----TKELGIPASVDLVSSDPSHMVASFSKGYTSIFN
   WD 6  605-643    ESN-VDTT--ANS----SCQINRVI----SHPTLPISITAHEDRHIKFYD
   WD 7  647-685    -GKLIHSM--VAH----LEAVTSLA----VDPNGLYLMSGSHDCSIRLWN
   WD 8  689-731    -KTCIQEF--TAHRKKFEESIHDVA----FHPSKCYIASAGADALAKVFV

   WD40 Template    TGECLRTL--SGH----TSGVTSVS----FSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019