WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000367866    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000367866 (Len=363)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000367866, Len=363):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGPQILPPCRSIVRTLHQHKLGR 80  
WD40-rpts                (_________________WD 1_________________)                              

Query       81 ASWPSVQQIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGN 160 
WD40-rpts       (_________________WD 2_________________)(___________________WD 3_______________

Query      161 VILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLL 240 
WD40-rpts      ____)  (_________________WD 4_________________)(____________________WD 5________

Query      241 TTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC 320 
WD40-rpts      ___________)          (______________________WD 6______________________)   (____

Query      321 QLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQEEARTRK 363 
WD40-rpts      _____________WD 7_________________)        



7 WD40-repeats found in QUERY=ENSP00000367866 (Len=363):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    11-50       7.45  422.25  0.00013        7.5%     46.69
  WD 2:  Seg  7    82-121      7.40  420.20  0.00014       20.0%     52.10
  WD 3:  Seg 11   122-165      6.70  391.38  0.00033       12.5%     48.94
  WD 4:  Seg 15   168-207      8.70  474.04  2.5e-05       37.5%     56.40
  WD 5:  Seg 19   208-252      8.80  478.04  2.2e-05       27.5%     49.04
  WD 6:  Seg 24   263-312      4.92  317.87  0.00323       20.0%     48.35
  WD 7:  Seg 28   316-355      5.67  348.74  0.00124       30.0%     54.74
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   11-50     KT---------S-----EIVLR-PRNKRSRSPL-ELEP-EAK-KLCAKG-SGPSRRCDS
   WD 2   82-121    -S---------W-----PSVQQ-IGAGGSITGL-KFNPLNTN-QFYASS-MEGTTRLQD
   WD 3  122-165    FK-----GNILR-----VFASS-DTINIWFCSL-DVSA-SSR-MVVTGD-NVGNVILLN
   WD 4  168-207    -G---------K-----ELWNL-RMHKKKVTHV-ALNP-CCDWFLATAS-VDQTVKIWD
   WD 5  208-252    LR---------QVRGKASFLYS-LPHRHPVNAA-CFSP-DGA-RLLTTD-QKSEIRVYS
   WD 6  263-312    IPHPHRHFQHLT-----PIKAA-WHPRYNLIVV-GRYP-DPN-FKSCTPYELRTIDVFD
   WD 7  316-355    -G---------K-----MMCQLYDPESSGISSLNEFNP-MGD-TLASAM--GYHILIWS

   WD40 Template    TG---------E-----CLRTL-SGHTSGVTSV-SFSP-DGK-RLVSGS-EDGTIKVWD


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Last modified: 09 Jan 2019