WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000367864    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000367864 (Len=244)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000367864, Len=244):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGPQILPPCRSIVRTLHQHKLGR 80  
WD40-rpts                                                                                      

Query       81 ASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSIT 160 
WD40-rpts                          (_________________WD 1_________________)(___________________

Query      161 GLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELVSVPM 240 
WD40-rpts      _WD 2___________________)(___________________WD 3___________________)           

Query      241 EPGS 244 
WD40-rpts          



3 WD40-repeats found in QUERY=ENSP00000367864 (Len=244):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   101-140      6.22  371.49  0.00061       22.5%     45.36
  WD 2:  Seg  6   141-185      6.65  389.21  0.00035       22.5%     47.96
  WD 3:  Seg 10   186-229      5.02  321.87  0.00286       12.5%     42.51
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  101-140    -Y----RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWN
   WD 2  141-185    FGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD
   WD 3  186-229    FKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLN

   WD40 Template    TG----ECLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019