Input parameters:
Query = ENSP00000367864 (Len=244)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000367864, Len=244):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGPQILPPCRSIVRTLHQHKLGR 80
WD40-rpts
Query 81 ASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSIT 160
WD40-rpts (_________________WD 1_________________)(___________________
Query 161 GLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELVSVPM 240
WD40-rpts _WD 2___________________)(___________________WD 3___________________)
Query 241 EPGS 244
WD40-rpts
3 WD40-repeats found in QUERY=ENSP00000367864 (Len=244):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 101-140 6.22 371.49 0.00061 22.5% 45.36
WD 2: Seg 6 141-185 6.65 389.21 0.00035 22.5% 47.96
WD 3: Seg 10 186-229 5.02 321.87 0.00286 12.5% 42.51
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 101-140 -Y----RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWN
WD 2 141-185 FGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD
WD 3 186-229 FKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLN
WD40 Template TG----ECLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD