WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000367789    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000367789 (Len=129)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000367789, Len=129):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGDLSLLFHFQKVESYLHQEVQTHR 80  
WD40-rpts        (_________________WD 1_________________)   (_______________WD 2_______________

Query       81 SYYGGLTLMNCIVKVLPKEISKDYILIHHHIFLISTQEHHIPMRKKLRL 129 
WD40-rpts      )                                                



2 WD40-repeats found in QUERY=ENSP00000367789 (Len=129):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-42      10.94  566.45  1.4e-06       50.0%     54.82
  WD 2:  Seg  5    46-81       5.94  359.92  0.00088       12.5%     37.56
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    3-42     RQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD
   WD 2   46-81     -KQCVNNFSDS---VGDLSLLFHFQKVESYLHQEVQTHRS

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019