Input parameters:
Query = ENSP00000367568 (Len=217)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000367568, Len=217):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNFSEVFKLSSLLCKFSPDGKYLASCVQYRLVVRDVNTLQILQLYTCLDQIQHIEWSADSLFILCAMYKRGLVQVWSLEQ 80
WD40-rpts (_______________WD 1______________)(__________________WD 2__________________)
Query 81 PEWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWSLCTKSVSYIKYPKACLQGITFTRDGRYMALAERRDCKDYV 160
WD40-rpts (_________________WD 3_________________) (_________________WD 4________________
Query 161 SIFVCSDWQLLRYKILLYSLDGRLLSTYSAYEWSLGIKSVAWSPSSQFLAVGSYDGK 217
WD40-rpts ) (_______________________WD 5______________________)
5 WD40-repeats found in QUERY=ENSP00000367568 (Len=217):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-35 6.22 371.59 0.00061 25.0% 39.68
WD 2: Seg 4 36-77 6.44 380.85 0.00046 15.0% 54.40
WD 3: Seg 8 81-120 7.67 431.63 9.5e-05 25.0% 56.00
WD 4: Seg 12 123-161 7.78 436.14 8.2e-05 7.5% 54.81
WD 5: Seg 16 167-217 3.88 275.13 0.01214 30.0% 44.72
Multiple sequence alignment of 5 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-35 -----MN----------------FSEVFKLSSLLCKFSPDGKYLASCVQ-Y-RLV-VRD
WD 2 36-77 VNTLQIL----------------QLYTCLDQIQHIEWSADSLFILCAMY-KRGLVQVWS
WD 3 81-120 -PEW-HC----------------KIDEGSAGLVASCWSPDGRHILNTTEFH-LRITVWS
WD 4 123-161 -TKS-VS----------------YIKYPKACLQGITFTRDGRYMALAER-R-DCKDYVS
WD 5 167-217 DWQL-LRYKILLYSLDGRLLSTYSAYEWSLGIKSVAWSPSSQFLAVGSY-D-GK-----
WD40 Template TGEC-LR----------------TLSGHTSGVTSVSFSPDGKRLVSGSE-D-GTIKVWD