WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000365720    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000365720 (Len=805)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000365720, Len=805):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIRDLSKMYPQTRHPAPHQPAQPFKFTISESCDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIE 80  
WD40-rpts                                                                                      

Query       81 MHKQAEIVKRLNAICAQVIPFLSQEHQQQVVQAVERAKQVTMAELNAIIGQQLQAQHLSHGHGLPVPLTPHPSGLQPPAI 160 
WD40-rpts                                                                                      

Query      161 PPIGSSAGLLALSSALGGQSHLPIKDEKKHHDNDHQRDRDSIKSSSVSPSASFRGAEKHRNSADYSSESKKQKTEEKEIA 240 
WD40-rpts                                                                                      

Query      241 ARYDSDGEKSDDNLVVDVSNEDPSSPRGSPAHSPRENGLDKTRLLKKDAPISPASIASSSSTPSSKSKELSLKRDMGKLS 320 
WD40-rpts                                                                                      

Query      321 ETRLSEDEQCTLGLQRWFCRLWFMNEKSTTPVSKSNTPTPRTDAPTPGSNSTPGLRPVPGKPPGVDPLASSLRTPMAVPC 400 
WD40-rpts                                                                                      

Query      401 PYPTPFGIVPHAGMNGELTSPGAAYAGLHNISPQMSAAAAAAAAAAAYGRSPVVGFDPHHHMRVPAIPPNLTGIPGGKPA 480 
WD40-rpts                                                                      (_______________

Query      481 YSFHVSADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLD 560 
WD40-rpts      ___WD 1__________________)  (________________WD 2________________)(_____________

Query      561 CLNRDNYIRSCRLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN 640 
WD40-rpts      ________WD 3____________________)     (_________________WD 4________________)   

Query      641 QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMENSNVEVLH 720 
WD40-rpts      (_________________WD 5________________)     (_______________WD 6_______________)

Query      721 VTKPDKYQLHLHESCVLSLKFAHCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATV 800 
WD40-rpts      (__________________WD 7_________________)(__________________WD 8________________

Query      801 YEVIY 805 
WD40-rpts      _)   



8 WD40-repeats found in QUERY=ENSP00000365720 (Len=805):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   465-506      3.54  260.79  0.01888       15.0%     18.87
  WD 2:  Seg  7   509-546      6.26  373.38  0.00058       25.0%     52.72
  WD 3:  Seg 11   547-593      7.72  433.53  8.9e-05       25.0%     48.39
  WD 4:  Seg 14   599-637      8.62  470.63  2.8e-05       30.0%     56.62
  WD 5:  Seg 18   641-679     10.01  528.24  4.7e-06       35.0%     54.18
  WD 6:  Seg 22   685-720      6.65  389.42  0.00035       22.5%     45.35
  WD 7:  Seg 25   721-761      8.35  459.63  4.0e-05       30.0%     54.49
  WD 8:  Seg 29   762-802      7.56  427.06  0.00011       32.5%     53.75
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  465-506    PAI-------PPNLTGIPGGKPAYSFHVSADGQMQPVPFPPDALIGPGI
   WD 2  509-546    -HA-------RQINTLN-HGEVVCAVTISNPTRHVYTG-G-KGCVKVWD
   WD 3  547-593    ISHPGNKSPVSQLDCLN-RDNYIRSCRLLPDGRTLIVG-GEASTLSIWD
   WD 4  599-637    -PR-------IKAELTS-SAPACYALAISPDSKVCFSC-CSDGNIAVWD
   WD 5  641-679    -QT-------LVRQFQG-HTDGASCIDISNDGTKLWTG-GLDNTVRSWD
   WD 6  685-720    QLQ-------QH----D-FTSQIFSLGYCPTGEWLAVG-MENSNVEVLH
   WD 7  721-761    VTK------PDKYQLHL-HESCVLSLKFAHCGKWFVST-GKDNLLNAWR
   WD 8  762-802    TPY------GASIFQSK-ESSSVLSCDISVDDKYIVTG-SGDKKATVYE

   WD40 Template    TGE-------CLRTLSG-HTSGVTSVSFSPDGKRLVSG-SEDGTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019