WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000365717    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000365717 (Len=805)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000365717, Len=805):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIRDLSKMYPQTRHPAPHQPAQPFKFTISESCDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIE 80  
WD40-rpts                                                                                      

Query       81 MHKQAEIVKRLNAICAQVIPFLSQEHQQQVVQAVERAKQVTMAELNAIIGQQLQAQHLSHGHGLPVPLTPHPSGLQPPAI 160 
WD40-rpts                                                                                      

Query      161 PPIGSSAGLLALSSALGGQSHLPIKDEKKHHDNDHQRERDKLNHKSLSPSASFRGAEKHRNSADYSSESKKQKTEEKEIA 240 
WD40-rpts                                                                                      

Query      241 ARYDSDGEKSDDNLVVDVSNEDPSSPRGSPAHSPRENGLDKTRLLKKDAPISPASIASSSSTPSSKSKELSLKRDMGKLS 320 
WD40-rpts                                                                                      

Query      321 ETRLSEDEQCTLGLQRWFCRLWFMNEKSTTPVSKSNTPTPRTDAPTPGSNSTPGLRPVPGKPPGVDPLASSLRTPMAVPC 400 
WD40-rpts                                                                                      

Query      401 PYPTPFGIVPHAGMNGELTSPGAAYAGLHNISPQMSAAAAAAAAAAAYGRSPVVGFDPHHHMRVPAIPPNLTGIPGGKPA 480 
WD40-rpts                                                                                      

Query      481 YSFHVSADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLD 560 
WD40-rpts                          (____________________WD 1____________________)(_____________

Query      561 CLNRDNYIRSCRLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN 640 
WD40-rpts      ________WD 2____________________)     (_________________WD 3________________)   

Query      641 QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMENSNVEVLH 720 
WD40-rpts      (_________________WD 4________________)(__________________WD 5_________________)

Query      721 VTKPDKYQLHLHESCVLSLKFAHCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATV 800 
WD40-rpts      (__________________WD 6_________________)(__________________WD 7________________

Query      801 YEVIY 805 
WD40-rpts      _)   



7 WD40-repeats found in QUERY=ENSP00000365717 (Len=805):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   501-546      5.97  361.34  0.00084       25.0%     48.31
  WD 2:  Seg 11   547-593      7.42  421.37  0.00013       25.0%     48.79
  WD 3:  Seg 14   599-637      8.47  464.45  3.4e-05       30.0%     55.94
  WD 4:  Seg 18   641-679      9.87  522.30  5.7e-06       35.0%     53.73
  WD 5:  Seg 22   680-720      6.74  392.98  0.00031       25.0%     48.38
  WD 6:  Seg 25   721-761      8.20  453.32  4.8e-05       30.0%     54.38
  WD 7:  Seg 29   762-802      7.50  424.67  0.00012       32.5%     54.66
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  501-546    LIG-------PGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWD
   WD 2  547-593    ISHPGNKSPVS-------QLDCL-NRDNYIRSCRLLPDGRTLIVGGEASTLSIWD
   WD 3  599-637    -PR-------I-------KAELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWD
   WD 4  641-679    -QT-------L-------VRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWD
   WD 5  680-720    LRE-------G-------RQLQQHDFTSQIFSLGYCPTGEWLAVGMENSNVEVLH
   WD 6  721-761    VTK------PD-------KYQLH-LHESCVLSLKFAHCGKWFVSTGKDNLLNAWR
   WD 7  762-802    TPY------GA-------SIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE

   WD40 Template    TGE-------C-------LRTLS-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019