Input parameters:
Query = ENSP00000364375 (Len=356)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000364375, Len=356):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MRRFLRPGHDPVRERLKRDLFQFNKTVEHGFPHQPSALGYSPSLRILAIGTRSGAIKLYGAPGVEFMGLHQENNAVTQIH 80
WD40-rpts (________________WD 1________________) (_________________
Query 81 LLPGQCQLVTLLDDNSLHLWSLKVKGGASELQEDESFTLRGPPGAAPSATQITVVLPHSSCELLYLGTESGNVFVVQLPA 160
WD40-rpts WD 2________________) (________________WD 3________________)
Query 161 FRALEDRTISSDAVLQRLPEEARHRRVFEMVEALQEHPRDPNQILIGYSRGLVVIWDLQGSRVLYHFLSSQQLENIWWQR 240
WD40-rpts (_____________________WD 4_____________________) (_________________WD
Query 241 DGRLLVSCHSDGSYCQWPVSSEAQQPEPLRSLVPYGPFPCKAITRILWLTTRQGLPFTIFQGGMPRASYGDRHCISVIHD 320
WD40-rpts 5________________)
Query 321 GQQTAFDFTSRVIGFTVLTEADPAASRRASGVGAQG 356
WD40-rpts
5 WD40-repeats found in QUERY=ENSP00000364375 (Len=356):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 23-60 7.64 430.27 9.9e-05 20.0% 45.09
WD 2: Seg 4 63-101 8.43 463.08 3.6e-05 22.5% 58.35
WD 3: Seg 10 120-157 3.18 246.18 0.02956 22.5% 34.32
WD 4: Seg 14 170-217 6.53 384.40 0.00041 17.5% 46.74
WD 5: Seg 17 220-258 6.90 399.82 0.00025 22.5% 56.67
Multiple sequence alignment of 5 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 23-60 --FNK-------TVEHGFPHQPSALGYSP-SLRILAIGTRSGAIKLYG
WD 2 63-101 -GVEF-------MGLHQENNAVTQIHLLP-GQCQLVTLLDDNSLHLWS
WD 3 120-157 RGPPG-------AAPSA--TQITVVLPHS-SCELLYLGTESGNVFVVQ
WD 4 170-217 SSDAVLQRLPEEARHRRVFEMVEALQEHPRDPNQILIGYSRGLVVIWD
WD 5 220-258 -GSRV-------LYHFLSSQQLENIWWQR-DGRLLVSCHSDGSYCQWP
WD40 Template TGECL-------RTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD