WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000364375    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000364375 (Len=356)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000364375, Len=356):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRRFLRPGHDPVRERLKRDLFQFNKTVEHGFPHQPSALGYSPSLRILAIGTRSGAIKLYGAPGVEFMGLHQENNAVTQIH 80  
WD40-rpts                            (________________WD 1________________)  (_________________

Query       81 LLPGQCQLVTLLDDNSLHLWSLKVKGGASELQEDESFTLRGPPGAAPSATQITVVLPHSSCELLYLGTESGNVFVVQLPA 160 
WD40-rpts      WD 2________________)                  (________________WD 3________________)   

Query      161 FRALEDRTISSDAVLQRLPEEARHRRVFEMVEALQEHPRDPNQILIGYSRGLVVIWDLQGSRVLYHFLSSQQLENIWWQR 240 
WD40-rpts               (_____________________WD 4_____________________)  (_________________WD 

Query      241 DGRLLVSCHSDGSYCQWPVSSEAQQPEPLRSLVPYGPFPCKAITRILWLTTRQGLPFTIFQGGMPRASYGDRHCISVIHD 320 
WD40-rpts      5________________)                                                              

Query      321 GQQTAFDFTSRVIGFTVLTEADPAASRRASGVGAQG 356 
WD40-rpts                                          



5 WD40-repeats found in QUERY=ENSP00000364375 (Len=356):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    23-60       7.64  430.27  9.9e-05       20.0%     45.09
  WD 2:  Seg  4    63-101      8.43  463.08  3.6e-05       22.5%     58.35
  WD 3:  Seg 10   120-157      3.18  246.18  0.02956       22.5%     34.32
  WD 4:  Seg 14   170-217      6.53  384.40  0.00041       17.5%     46.74
  WD 5:  Seg 17   220-258      6.90  399.82  0.00025       22.5%     56.67
Multiple sequence alignment of 5 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   23-60     --FNK-------TVEHGFPHQPSALGYSP-SLRILAIGTRSGAIKLYG
   WD 2   63-101    -GVEF-------MGLHQENNAVTQIHLLP-GQCQLVTLLDDNSLHLWS
   WD 3  120-157    RGPPG-------AAPSA--TQITVVLPHS-SCELLYLGTESGNVFVVQ
   WD 4  170-217    SSDAVLQRLPEEARHRRVFEMVEALQEHPRDPNQILIGYSRGLVVIWD
   WD 5  220-258    -GSRV-------LYHFLSSQQLENIWWQR-DGRLLVSCHSDGSYCQWP

   WD40 Template    TGECL-------RTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019