Input parameters:
Query = ENSP00000363308 (Len=367)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000363308, Len=367):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLLLRCQLKQAPPQKVSFRFCVVMGKQQSKLKHSTYKYGRPDEIIEERIQTKAFQEYSPAHMDTVSVVAALNSDLCVSGG 80
WD40-rpts (________________WD 1________
Query 81 KDKTVVAYNWKTGNVVKRFKGHEHEITKVACIPKSSQFFSASRDRMVMMWDLHGSSQPRQQLCGHAMVVTGLAVSPDSSQ 160
WD40-rpts ________) (_________________WD 2________________) (_________________WD 3___
Query 161 LCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQHIQTYCEVSV 240
WD40-rpts _____________) (_________________WD 4________________) (___________________W
Query 241 DGHKCISCSNGFGGEGCEATLWDLRQTRNRICEYKGHFQTVASCVFLPRALALMPLIATSSHDCKVKIWNQDTGACLFTL 320
WD40-rpts D 5___________________) (___________________WD 6__________________) (______
Query 321 SLDGSGPLTSLAVGDAISLLCASFNRGIHLLRMDHSQGLELQEVAAF 367
WD40-rpts ___________WD 7________________)
7 WD40-repeats found in QUERY=ENSP00000363308 (Len=367):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 5 52-89 7.40 420.38 0.00013 22.5% 46.26
WD 2: Seg 9 93-131 9.79 519.18 6.3e-06 27.5% 56.35
WD 3: Seg 13 136-174 10.17 534.76 3.9e-06 37.5% 55.03
WD 4: Seg 17 178-216 9.58 510.55 8.2e-06 27.5% 54.92
WD 5: Seg 21 220-263 7.61 429.02 0.00010 22.5% 43.89
WD 6: Seg 25 268-310 7.83 437.93 7.8e-05 27.5% 48.01
WD 7: Seg 29 314-352 8.76 476.45 2.4e-05 30.0% 54.89
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 52-89 KAFQEYSPAHMDTV-SVVAALNSDLC----VS-----GGKDKTVVAYN
WD 2 93-131 GNVVKRFKGHEHEITKVACIPKSSQF----FS-----ASRDRMVMMWD
WD 3 136-174 SQPRQQLCGHAMVVTGLAVSPDSSQL----CT-----GSRDNTLLLWD
WD 4 178-216 GQSVERASVSRNVVTHLCWVPREPYI----LQ-----TSEDKTLRLWD
WD 5 220-263 LQVAHMFPAKQHIQTYCEVSVDGHKC----ISCSNGFGGEGCEATLWD
WD 6 268-310 RNRICEYKGHFQTVASCVFLPRALALMPLIAT-----SSHDCKVKIWN
WD 7 314-352 GACLFTLSLDGSGPLTSLAVGDAISL----LC-----ASFNRGIHLLR
WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRL----VS-----GSEDGTIKVWD