WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000363308    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000363308 (Len=367)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000363308, Len=367):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLLLRCQLKQAPPQKVSFRFCVVMGKQQSKLKHSTYKYGRPDEIIEERIQTKAFQEYSPAHMDTVSVVAALNSDLCVSGG 80  
WD40-rpts                                                         (________________WD 1________

Query       81 KDKTVVAYNWKTGNVVKRFKGHEHEITKVACIPKSSQFFSASRDRMVMMWDLHGSSQPRQQLCGHAMVVTGLAVSPDSSQ 160 
WD40-rpts      ________)   (_________________WD 2________________)    (_________________WD 3___

Query      161 LCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQHIQTYCEVSV 240 
WD40-rpts      _____________)   (_________________WD 4________________)   (___________________W

Query      241 DGHKCISCSNGFGGEGCEATLWDLRQTRNRICEYKGHFQTVASCVFLPRALALMPLIATSSHDCKVKIWNQDTGACLFTL 320 
WD40-rpts      D 5___________________)    (___________________WD 6__________________)   (______

Query      321 SLDGSGPLTSLAVGDAISLLCASFNRGIHLLRMDHSQGLELQEVAAF 367 
WD40-rpts      ___________WD 7________________)               



7 WD40-repeats found in QUERY=ENSP00000363308 (Len=367):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    52-89       7.40  420.38  0.00013       22.5%     46.26
  WD 2:  Seg  9    93-131      9.79  519.18  6.3e-06       27.5%     56.35
  WD 3:  Seg 13   136-174     10.17  534.76  3.9e-06       37.5%     55.03
  WD 4:  Seg 17   178-216      9.58  510.55  8.2e-06       27.5%     54.92
  WD 5:  Seg 21   220-263      7.61  429.02  0.00010       22.5%     43.89
  WD 6:  Seg 25   268-310      7.83  437.93  7.8e-05       27.5%     48.01
  WD 7:  Seg 29   314-352      8.76  476.45  2.4e-05       30.0%     54.89
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   52-89     KAFQEYSPAHMDTV-SVVAALNSDLC----VS-----GGKDKTVVAYN
   WD 2   93-131    GNVVKRFKGHEHEITKVACIPKSSQF----FS-----ASRDRMVMMWD
   WD 3  136-174    SQPRQQLCGHAMVVTGLAVSPDSSQL----CT-----GSRDNTLLLWD
   WD 4  178-216    GQSVERASVSRNVVTHLCWVPREPYI----LQ-----TSEDKTLRLWD
   WD 5  220-263    LQVAHMFPAKQHIQTYCEVSVDGHKC----ISCSNGFGGEGCEATLWD
   WD 6  268-310    RNRICEYKGHFQTVASCVFLPRALALMPLIAT-----SSHDCKVKIWN
   WD 7  314-352    GACLFTLSLDGSGPLTSLAVGDAISL----LC-----ASFNRGIHLLR

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRL----VS-----GSEDGTIKVWD


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Last modified: 09 Jan 2019