WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000362825    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000362825 (Len=127)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000362825, Len=127):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MILISAGCPGGLWPIVVLVGLFIWICFAVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVY 80  
WD40-rpts      (______________WD 1_____________)       (___________________WD 2________________

Query       81 VWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASSDKRLYMGEIQ 127 
WD40-rpts      __)   (_________________WD 3________________)  



3 WD40-repeats found in QUERY=ENSP00000362825 (Len=127):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-33       5.05  323.46  0.00272       12.5%     39.93
  WD 2:  Seg  5    41-83       8.55  467.88  3.1e-05       32.5%     53.25
  WD 3:  Seg  9    87-125      9.69  514.93  7.1e-06       27.5%     52.61
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-33     --MILISAGCP----GGLWPIVVLVGLFIWI----CFAVRVWD
   WD 2   41-83     ERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWD
   WD 3   87-125    RRILYKLPGHA----GSINEVAFHPDEPIIISASSDKRLYMGE

   WD40 Template    GECLRTLSGHT----SGVTSVSFSPDGKRLVSGSEDGTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019