WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000362770    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000362770 (Len=369)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000362770, Len=369):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLKSLLLRYYPPGIMLEYEKHGELKTKSIDLLDLGPSTDVSALVEEIQKAEPLLTASRTEQVKLLIQRLQEKLGQNSNH 80  
WD40-rpts                                 (_________________WD 1________________)              

Query       81 TFYLFKVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCK 160 
WD40-rpts       (_________________WD 2________________)   (_________________WD 3_______________

Query      161 LWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFD 240 
WD40-rpts      __)   (_________________WD 4________________)   (_________________WD 5__________

Query      241 HTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIAT 320 
WD40-rpts      ______)   (_________________WD 6________________)   (_________________WD 7______

Query      321 ASADDGVSLCRPGWSAVARSWLTATCASQVQAILLPQPPELCHVLGNHV 369 
WD40-rpts      __________)                                      



7 WD40-repeats found in QUERY=ENSP00000362770 (Len=369):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    28-66       7.19  411.50  0.00018       17.5%     44.90
  WD 2:  Seg  8    82-120      9.37  501.83  1.1e-05       30.0%     54.08
  WD 3:  Seg 12   124-163      9.49  506.48  9.3e-06       42.5%     54.57
  WD 4:  Seg 16   167-205     10.65  554.47  2.1e-06       40.0%     54.40
  WD 5:  Seg 20   209-247     10.71  557.06  1.9e-06       45.0%     52.43
  WD 6:  Seg 24   251-289     10.15  534.05  3.9e-06       37.5%     55.07
  WD 7:  Seg 28   293-331      9.65  513.14  7.5e-06       27.5%     55.81
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   28-66     KSIDLLDLGPSTDVSALVEEI-QKAEPLLTASRTEQVKLL-
   WD 2   82-120    -FYLFKVLKAHILPLTNVALN-KSGSCFITGSYDRTCKLWD
   WD 3  124-163    -GEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWS
   WD 4  167-205    -GKCYHTFRGHTAEIVCLSFN-PQSTLVATGSMDTTAKLWD
   WD 5  209-247    -GEEVYTLRGHSAEIISLSFN-TSGDRIITGSFDHTVVVWD
   WD 6  251-289    -GRKVNILIGHCAEISSASFN-WDCSLILTGSMDKTCKLWD
   WD 7  293-331    -GKCVATLTGHDDEILDSCFD-YTGKLIATASADDGVSLCR

   WD40 Template    TGECLRTLSGHTSGVTSVSFS-PDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019