WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000362677    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000362677 (Len=314)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000362677, Len=314):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNSGVPATLAVRRVKFFGQHGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFAS 80  
WD40-rpts               (_________________WD 1_________________)   (_________________WD 2______

Query       81 ASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQSSDFSPTVN 160 
WD40-rpts      __________)   (_________________WD 3________________)   (_________________WD 4__

Query      161 CLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANISCLCYSASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIA 240 
WD40-rpts      ______________)      (________________WD 5________________)   (_________________

Query      241 FSPDELWLASAGYSRMVKVWDCNTGKCLETLKGVLDVAHTCAFTPDGKILVSGAADQTRRQISRTSKSPRDPQT 314 
WD40-rpts      WD 6________________)   (_________________WD 7________________)           



7 WD40-repeats found in QUERY=ENSP00000362677 (Len=314):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    10-49       9.86  522.16  5.7e-06       37.5%     54.23
  WD 2:  Seg  5    53-91      10.58  551.55  2.3e-06       45.0%     59.21
  WD 3:  Seg  9    95-133     10.92  565.64  1.5e-06       47.5%     57.60
  WD 4:  Seg 13   137-175     10.53  549.62  2.4e-06       42.5%     56.83
  WD 5:  Seg 17   182-219      8.32  458.24  4.1e-05       32.5%     48.60
  WD 6:  Seg 21   223-261     10.08  531.16  4.3e-06       40.0%     57.45
  WD 7:  Seg 25   265-303     10.01  528.18  4.7e-06       42.5%     54.64
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   10-49     AVRRVKFFGQHGGEVNSSAFSPDGQMLLTGSEDGCVYGWE
   WD 2   53-91     -GQLLWRLGGHTGPVKFCRFSPDGHLFASASCDCTVRLWD
   WD 3   95-133    -AKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWD
   WD 4  137-175    -GQMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWD
   WD 5  182-219    -AVSHQALEGHSANISCLCYSASG-LLASGSWDKTIHIWK
   WD 6  223-261    -SSLLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVKVWD
   WD 7  265-303    -GKCLETLKGVLDVAHTCAFTPDGKILVSGAADQTRRQIS

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019