WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000362625    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000362625 (Len=428)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000362625, Len=428):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSGLRAADFPRWKRHISEQLRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAQKLQAEKHDVPNRHEIRRRQARLQKEL 80  
WD40-rpts                                                                                      

Query       81 AEAAKEPLPVEQDDDIEVIVDETSDHTEETSPVRAISRAATKRLSQPAGGLLDSITNIFGRRSVSSFPVPQDNVDTHPGS 160 
WD40-rpts          (__________________WD 1__________________)           (_____________WD 2_____

Query      161 GKEVRVPATALCVFDAHDGEVNAVQFSPGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLD 240 
WD40-rpts      _______)       (_________________WD 3_________________)   (_________________WD 4

Query      241 NARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREMELLGKITALDLNPE 320 
WD40-rpts      ________________)   (_______________WD 5_______________)   (________________WD 6

Query      321 RTELLSCSRDDLLKVIDLRTNAIKQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSS 400 
WD40-rpts      ________________)   (___________________WD 7__________________)   (_____________

Query      401 INAVAWSPSGSHVVSVDKGCKAVLWAQY 428 
WD40-rpts      ____WD 8_________________)  



8 WD40-repeats found in QUERY=ENSP00000362625 (Len=428):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    85-126      3.89  275.27  0.01209       10.0%     -1.11
  WD 2:  Seg  3   138-168      3.22  247.82  0.02811       15.0%     26.97
  WD 3:  Seg  7   176-215      9.65  513.19  7.5e-06       22.5%     50.84
  WD 4:  Seg 11   219-257     10.61  552.79  2.2e-06       45.0%     55.98
  WD 5:  Seg 15   261-296      6.83  396.82  0.00028       22.5%     45.34
  WD 6:  Seg 19   300-337      7.46  422.70  0.00013       25.0%     54.12
  WD 7:  Seg 23   341-383      8.44  463.40  3.5e-05       35.0%     53.35
  WD 8:  Seg 27   387-426      8.41  462.18  3.7e-05       30.0%     49.22
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   85-126    ----KEPLP-VEQ----DDDIEVIVDETSDHTEETSPVRAISRAATKRLSQ
   WD 2  138-168    --------I-FGR----RSVSSF------PVPQDNVDTHPGSGK-EVRVPA
   WD 3  176-215    AHDGEVNAV-QFS----PGITSI------EFDSAGSYLLAASNDFASRIWT
   WD 4  219-257    -YRLRHTLT-GHS----GKVLSA------KFLLDNARIVSGSHDRTLKLWD
   WD 5  261-296    -KVCIKTVF-AGS----S---CN------DIVCTEQCVMSGHFDKKIRFWD
   WD 6  300-337    -ESIVREME-LL-----GKITAL------DLNPERTELLSCSRDDLLKVID
   WD 7  341-383    -NAIKQTFS-APGFKCGSDWTRV------VFSPDGSYVAAGSAEGSLYIWS
   WD 8  387-426    -GKVEKVLSKQHS----SSINAV------AWSPSGSHVVSVDKGCKAVLWA

   WD40 Template    TGECLRTLS-GHT----SGVTSV------SFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019