Accession: ENSP00000360887 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSP00000360887 (Len=351)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000360887, Len=351):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKYNTEGRVSPSPSQESLSSSKSDTDTGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVR 80  
WD40-rpts      (_____________WD 1____________)              (________________WD 2______________

Query       81 LWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGT 160 
WD40-rpts      __)   (_________________WD 3________________)(___________________WD 4___________

Query      161 YDGRCIFYDTEHLKYHTQIHVRSTRGRNKVGRKITGIEPLPGENKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIK 240 
WD40-rpts      ________)               (_______________WD 5______________)   (_________________

Query      241 ASFSHDFTYLVSGSEDKYVYIWSTYHDLSKFTSVRRDRNDFWEGIKAHNAVVTSAIFAPNPSLMLSLDVQSEKSEGNEKS 320 
WD40-rpts      _WD 6_________________)               (________________WD 7________________)    

Query      321 EDAEVLDATPSGAVAHACNPSTLGDQGRRIM 351 
WD40-rpts

7 WD40-repeats found in QUERY=ENSP00000360887 (Len=351):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-31       5.42  338.58  0.00170       20.0%     39.65
  WD 2:  Seg  4    46-83       7.19  411.46  0.00018       27.5%     48.48
  WD 3:  Seg  8    87-125      7.57  427.49  0.00011       37.5%     55.82
  WD 4:  Seg 12   126-169      8.78  477.34  2.3e-05       27.5%     56.35
  WD 5:  Seg 17   185-219      6.90  399.83  0.00025       17.5%     48.91
  WD 6:  Seg 20   223-263      8.21  453.67  4.8e-05       32.5%     57.73
  WD 7:  Seg 25   279-316      6.80  395.57  0.00029       20.0%     47.64

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-31     -------------MKYNTEGRV--SPSP-SQESLSSSKSDTDTGVCS
   WD 2   46-83     -QR----PFCKYKGHTADLLDL--SWSK-NY-FLLSSSMDKTVRLWH
   WD 3   87-125    -RE----CLCCF-QHIDFVTAI--AFHPRDDRYFLSGSLDGKLRLWN
   WD 4  126-169    IPDKKVALWNEVDGQTKLITAA--NFCQ-NGKYAVIGTYDGRCIFYD
   WD 5  185-219    RG---------RNKVGRKITGI--EPLP-GENKILVTSNDSRIRLYD
   WD 6  223-263    -LS----LSMKYKGYVNSSSQIKASFSH-DFTYLVSGSEDKYVYIWS
   WD 7  279-316    -ND----FWEGIKAHNAVVTSA--IFAP-NPSLMLSLDVQ-SEKSEG

   WD40 Template    TGE----CLRTLSGHTSGVTSV--SFSP-DGKRLVSGSEDGTIKVWD