WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000358979    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000358979 (Len=919)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000358979, Len=919):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTAEETVNVKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQWDEVLQFIQPLECMEKFDKK 80  
WD40-rpts                                                                                      

Query       81 RFRYIILKQKFLEALCVNNAMSAEDEPQHLEFTMQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTA 160 
WD40-rpts                                                                                      

Query      161 RVHCFEEACVMVAEFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDL 240 
WD40-rpts                                                                                      

Query      241 DLSLLSWLQNLPSSVFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSLNPALDGL 320 
WD40-rpts                                                                                      

Query      321 TCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSLMLENTECHSIYEESPERDTPVDAQRPIGSEILGQSSVSEK 400 
WD40-rpts                                                                                      

Query      401 EPANGAQNPGPAKQEKNELRDSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQFLNRSI 480 
WD40-rpts                                                                                      

Query      481 QKLGELNIGMDGLGNEVSALNQQCNGSKGNGSNGSSVTSFTTPPQDSSQRLTHDASNIHTSTPRNPGSTNHIPFLEESPC 560 
WD40-rpts          (________________WD 1_______________)           (____________________WD 2___

Query      561 GSQISSEHSVIKPPLGDSPGSLSRSKGEEDDKSKKQFVCINILEDTQAVRAVAFHPAGGLYAVGSNSKTLRVCAYPDVID 640 
WD40-rpts      ________________)                        (______________WD 3_____________)      

Query      641 PSAHETPKQPVVRFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATGPDLEFSMHDGTIRDLAFMEGP 720 
WD40-rpts                (_________________WD 4________________)(_______________________WD 5___

Query      721 ESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTG 800 
WD40-rpts      ____________________)   (________________WD 6________________)         (________

Query      801 SAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLP 880 
WD40-rpts      ________WD 7_______________)   (_________________WD 8________________)       (__

Query      881 IMVVGEHKDKVIQCRWHTQDLSFLSSSADRTVTLWTYNG 919 
WD40-rpts      _______________WD 9________________)   



9 WD40-repeats found in QUERY=ENSP00000358979 (Len=919):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   485-521      4.92  318.07  0.00322       15.0%     27.55
  WD 2:  Seg  7   533-577      5.79  353.72  0.00106       17.5%     19.43
  WD 3:  Seg 10   602-634      6.73  392.65  0.00032       25.0%     44.77
  WD 4:  Seg 13   651-689      7.79  436.40  8.2e-05       27.5%     52.50
  WD 5:  Seg 17   690-741      5.20  329.48  0.00226       20.0%     43.07
  WD 6:  Seg 20   745-782      8.70  474.22  2.5e-05       37.5%     51.97
  WD 7:  Seg 25   792-828      8.91  482.88  1.9e-05       35.0%     45.57
  WD 8:  Seg 28   832-870      9.66  513.67  7.4e-06       42.5%     57.31
  WD 9:  Seg 32   878-916      7.38  419.56  0.00014       17.5%     49.89
Multiple sequence alignment of 9 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  485-521    -------ELN-------IGMDGLGNEVSALNQ-----QCNGS-KGNGSNGSSVTSFT
   WD 2  533-577    HDASNIHTST-------PRNPGSTNHIPFLEE-----SPCGSQISSEHSVIKPPLGD
   WD 3  602-634    -------------------ILEDTQAVRAVAF-----HPAGGLYAVGSNSKTLRVCA
   WD 4  651-689    -V-----VRF-------KRNKHHKGSIYCVAW-----SPCGQLLATGSNDKYVKVLP
   WD 5  690-741    FN-----AETCNATGPDLEFSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTD
   WD 6  745-782    -G-----QGL-------HALSGHTGHILAL-Y-----TWSGWMIASGSQDKTVRFWD
   WD 7  792-828    VG---------------TTFHGTGSAVASVAV-----DPSGRLLATGQEDSSCMLYD
   WD 8  832-870    -G-----RMV-------QSYHPHSSDVRSVRF-----SPGAHYLLTGSYDMKIKVTD
   WD 9  878-916    -Q-----LPI-------MVVGEHKDKVIQCRW-----HTQDLSFLSSSADRTVTLWT

   WD40 Template    TG-----ECL-------RTLSGHTSGVTSVSF-----SPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019