WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000358854    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000358854 (Len=800)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000358854, Len=800):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTTNNGPNGGGGNVAASSSTGGDGGTPKPTVAVSAAAPAGAAP 80  
WD40-rpts                                                                                      

Query       81 VPAAAPDAGAPHDRQTLLAVLQFLRQSKLREAEEALRREAGLLEEAVAGSGAPGEVDSAGAEVTSALLSRVTASAPGPAA 160 
WD40-rpts                                                                                      

Query      161 PDPPGTGASGATVVSGSASGPAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLF 240 
WD40-rpts                                                                                      

Query      241 YPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRH 320 
WD40-rpts                                                                                      

Query      321 LQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKP 400 
WD40-rpts                                                                                      

Query      401 KKKKPKKDSIGSKSKKQDPNAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTD 480 
WD40-rpts                                                                 (_________________WD 

Query      481 DSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLS 560 
WD40-rpts      1________________)(_____________WD 2____________)   (_________________WD 3______

Query      561 SSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSN 640 
WD40-rpts      __________)   (_________________WD 4________________)   (_________________WD 5__

Query      641 YVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFS 720 
WD40-rpts      ______________)   (_________________WD 6________________)   (_________________WD

Query      721 RDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSPQ 800 
WD40-rpts       7________________)   (_________________WD 8________________)                   



8 WD40-repeats found in QUERY=ENSP00000358854 (Len=800):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   460-498      8.03  446.25  6.0e-05       27.5%     54.75
  WD 2:  Seg  9   499-529      4.60  304.57  0.00488       15.0%     40.89
  WD 3:  Seg 12   533-571     10.04  529.20  4.6e-06       45.0%     54.08
  WD 4:  Seg 16   575-613      8.96  484.79  1.8e-05       35.0%     52.94
  WD 5:  Seg 20   617-655      9.81  519.88  6.1e-06       32.5%     49.94
  WD 6:  Seg 24   659-697     10.68  555.92  2.0e-06       40.0%     54.90
  WD 7:  Seg 28   701-739     10.36  542.68  3.0e-06       47.5%     55.17
  WD 8:  Seg 32   743-781      3.55  261.23  0.01863        7.5%     43.15
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  460-498    SICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWS
   WD 2  499-529    --------VTPKKLRSVKQASDLSLIDKESDDVLERIMD
   WD 3  533-571    ASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWS
   WD 4  575-613    FTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWA
   WD 5  617-655    YQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWD
   WD 6  659-697    GNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWD
   WD 7  701-739    GLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
   WD 8  743-781    AFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVV

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019