WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000358733    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000358733 (Len=303)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000358733, Len=303):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATNIPCEVVAFSDRKLKPLIYVYSFPGLTRRTKLKGNILLDYTLLSFSYCGTYLASYSSLPEFELALWNWESSIILCKK 80  
WD40-rpts                                  (__________________WD 1__________________)   (______

Query       81 SQPGMDVNQMSFNPMNWRQLCLSSPSTVSVWTIERSNQEHCFRARSVKLPLEDGSFFNETDVVFPQSLPKDLIYGPVLPL 160 
WD40-rpts      ___________WD 2________________)  (__________________WD 3__________________)    

Query      161 SAIAGLVGKEAETFRPKDDLYPLLHPTMHCWTPTSDLYIGCEEGHLLMINGDTLQVTVLNKIEEESPLEDRRNFISPVTL 240 
WD40-rpts                                                                   (_________________W

Query      241 VYQKEGVLASGIDGFVYSFIIKDRSYMIEDFLEIERPVEHMTFSPNYTVLLIQTDKVCWMVIS 303 
WD40-rpts      D 4________________) (__________________WD 5__________________)



5 WD40-repeats found in QUERY=ENSP00000358733 (Len=303):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    29-70       5.73  351.17  0.00115       27.5%     54.54
  WD 2:  Seg  7    74-112      8.55  468.03  3.1e-05       27.5%     60.27
  WD 3:  Seg 11   115-156      6.22  371.78  0.00061        7.5%     21.90
  WD 4:  Seg 20   222-260      7.69  432.16  9.3e-05       12.5%     42.62
  WD 5:  Seg 23   262-303      6.35  376.97  0.00052       15.0%     49.69
Multiple sequence alignment of 5 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   29-70     -LT--RRTKLKGNILLDY--TLLSFSYCGTYLASYSSLPEFELALWN
   WD 2   74-112    -SI--ILCKKSQPGM-DV--NQMSFNPMNWRQLCLSS--PSTVSVWT
   WD 3  115-156    RSN--QEHCFRARSV-KLPLEDGSFFNETDVVFPQSL--PKDLIYGP
   WD 4  222-260    -IE--EESPLEDRRN-FI--SPVTLVYQKEGVLASGI--DGFVYSFI
   WD 5  262-303    KDRSYMIEDFLEIER-PV--EHMTFSPNYTVLLIQTD--KVCWMVIS

   WD40 Template    TGE--CLRTLSGHTS-GV--TSVSFSPDGKRLVSGSE--DGTIKVWD


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Last modified: 09 Jan 2019