WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000358428    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000358428 (Len=351)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000358428, Len=351):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLVCLTDFQAHAREQLSKSTRDFIEGGADDSITRDDNIAAFKRIRLRPRYLRDVSEVDTRTTIQGEEISAPICIAPTGF 80  
WD40-rpts                                                                                      

Query       81 HCLVWPDGEMSTARAAQAAGICYITSTFASCSLEDIVIAAPEGLRWFQLYVHPDLQLNKQLIQRVESLGFKALVITLDTP 160 
WD40-rpts                                                                                      

Query      161 VCGNRRHDIRNQLRRNLTLTDLQSPKKGNAIPYFQMTPISTSLCWNDLSWFQSITRLPIILKGILTKEDAELAVKHNVQG 240 
WD40-rpts                                                           (__________________________

Query      241 IIVSNHGGRQLDEVLASIDALTEVVAAVKGKIEVYLDGGVRTGNDVLKALALGAKCIFLGRPILWGLACKGEHGVKEVLN 320 
WD40-rpts      ___________WD 1_____________________________________)                           

Query      321 ILTNEFHTSMALTGCRSVAEINRNLVQFSRL 351 
WD40-rpts                                     



1 WD40-repeats found in QUERY=ENSP00000358428 (Len=351):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   214-293      3.33  252.37  0.02446       20.0%      7.07
Multiple sequence alignment of 1 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  214-293    ITRLPIILKGILTKEDAELAVKHNVQGIIVSNHGGRQLDEVLASIDALTEVVAAVKGKIEVYLDGGVRTGNDVLKALALG

   WD40 Template    TGECLRTLSGHTS----------GVTSVSFSPDGKRLVSGS---------------------EDGTIKVW---------D


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Last modified: 09 Jan 2019