WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000357852    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000357852 (Len=145)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000357852, Len=145):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAWSGGLDHQLK 80  
WD40-rpts        (__________________WD 1_________________)  (________________WD 2______________

Query       81 MHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVHLIIL 145 
WD40-rpts      __)(__________________WD 3_________________)                     



3 WD40-repeats found in QUERY=ENSP00000357852 (Len=145):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-43       8.36  460.03  3.9e-05       25.0%     55.61
  WD 2:  Seg  5    46-83       6.92  400.46  0.00025       27.5%     54.69
  WD 3:  Seg  9    84-124      9.31  499.11  1.2e-05       27.5%     51.69
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    3-43     GS-NEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYD
   WD 2   46-83     -A-NSMRLKYQHTGAVLDCAFY-D-PTHAWSGGLDHQLKMHD
   WD 3   84-124    LNTDQENLVGTHDAPIRCVEYCPE-VNVMVTGSWDQTVKLWD

   WD40 Template    TG-ECLRTLSGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019