WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000357851    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000357851 (Len=326)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000357851, Len=326):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAWSGGLDHQLK 80  
WD40-rpts        (__________________WD 1_________________)  (________________WD 2______________

Query       81 MHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVL 160 
WD40-rpts      __)(__________________WD 3_________________)  (________________WD 4_____________

Query      161 VWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI 240 
WD40-rpts      __)(___________________WD 5___________________)                    (____________

Query      241 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAE 320 
WD40-rpts      ___WD 6______________)   (_________________WD 7________________)                

Query      321 TKPKST 326 
WD40-rpts            



7 WD40-repeats found in QUERY=ENSP00000357851 (Len=326):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-43       7.73  434.06  8.8e-05       25.0%     51.77
  WD 2:  Seg  5    46-83       6.61  387.58  0.00037       27.5%     55.20
  WD 3:  Seg  9    84-124      9.08  489.70  1.6e-05       27.5%     51.98
  WD 4:  Seg 13   127-163      5.09  325.06  0.00259       25.0%     47.18
  WD 5:  Seg 17   164-207      6.51  383.67  0.00042       17.5%     55.26
  WD 6:  Seg 22   228-262      7.78  436.18  8.2e-05       20.0%     37.68
  WD 7:  Seg 25   266-304      5.81  354.85  0.00103       20.0%     39.41
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    3-43     GS-NE----FKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYD
   WD 2   46-83     -A-NS----MRLKYQHTGAVLDCAFY-D-PTHAWSGGLDHQLKMHD
   WD 3   84-124    LNTDQ----ENLVGTHDAPIRCVEYCPE-VNVMVTGSWDQTVKLWD
   WD 4  127-163    -T-PC----NAGTFSQPEKVYTL--SVS-GDRLIVGTAGRRVLVWD
   WD 5  164-207    LR-NMGYVQQRRESSLKYQTRCIRAFPN-KQGYVLSSIEGRVAVEY
   WD 6  228-262    ----------ENNIEQIYPVNAISFHNI-HNTFATGGSDGFVNIWD
   WD 7  266-304    -K-KR----LCQFHRYPTSIASLAFSND-GTTLAIASSYMYEMDDT

   WD40 Template    TG-EC----LRTLSGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019