WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000357048    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000357048 (Len=1233)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000357048, Len=1233):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNY 80  
WD40-rpts      (________________WD 1_______________)   (_________________WD 2________________) 

Query       81 KLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMCAQFHPTEDLVVSASLDQTVR 160 
WD40-rpts        (_________________WD 3________________)   (_________________WD 4______________

Query      161 VWDISGLRKKNLSPGAVESDVRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW 240 
WD40-rpts      __)                               (_________________WD 5________________)(______

Query      241 EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMIVFKLE 320 
WD40-rpts      _____________WD 6___________________)(__________________WD 7_________________)  

Query      321 RERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDA 400 
WD40-rpts                               (____________________WD 8___________________)          

Query      401 DSQNPDAPEGKRSSGLTAVWVARNRFAVLDRMHSLLIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK 480 
WD40-rpts                                                                                  (___

Query      481 RTLASVKISKVKYVIWSADMSHVALLAKHEHSCPLPLTAIVICNRKLDALCNIHENIRVKSGAWDESGVFIYTTSNHIKY 560 
WD40-rpts      ______________WD 9_________________)                                            

Query      561 AVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFKLALINRKYDEVLHMVRNAKLVGQSIIAYLQK 640 
WD40-rpts                                                                                      

Query      641 KGYPEVALHFVKDEKTRFSLALECGNIEIALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSFLYLITG 720 
WD40-rpts                                                                                      

Query      721 NLEKLRKMMKIAEIRKDMSGHYQNALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAESLKETFDPEKETIPDIDPN 800 
WD40-rpts                                                                                      

Query      801 AKLLQPPAPIMPLDTNWPLLTVSKGFFEGTIASKGKGGALAADIDIDTVGTEGWGEDAELQLDEDGFVEATEGLGDDALG 880 
WD40-rpts                                                                                      

Query      881 KGQEEGGGWDVEEDLELPPELDISPGAAGGAEDGFFVPPTKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVIQ 960 
WD40-rpts                                                                                      

Query      961 FGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGLKNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRS 1040
WD40-rpts                                                                                      

Query     1041 ILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSVETERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNL 1120
WD40-rpts                                                                                      

Query     1121 FFKLKNFKTAATFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGAC 1200
WD40-rpts                                                                                      

Query     1201 YSPEFKGQICRVTTVTEIGKDVIGLRISPLQFR 1233
WD40-rpts                                       



9 WD40-repeats found in QUERY=ENSP00000357048 (Len=1233):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       4.97  320.12  0.00302       22.5%     46.92
  WD 2:  Seg  4    41-79       7.10  407.77  0.00020       27.5%     56.58
  WD 3:  Seg  8    83-121      8.19  452.80  4.9e-05       35.0%     55.55
  WD 4:  Seg 12   125-163      8.72  474.85  2.5e-05       37.5%     56.97
  WD 5:  Seg 19   195-233      8.53  467.17  3.1e-05       32.5%     56.18
  WD 6:  Seg 23   234-277      8.28  456.85  4.3e-05       37.5%     52.53
  WD 7:  Seg 27   278-318      3.12  243.74  0.03185       15.0%     57.48
  WD 8:  Seg 34   346-390      3.13  243.79  0.03181       12.5%     38.94
  WD 9:  Seg 45   477-516      4.39  296.06  0.00636       15.0%     38.03
Multiple sequence alignment of 9 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-37     --------M----LTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWD
   WD 2   41-79     -CT-----L----IDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWN
   WD 3   83-121    -RR-----C----LFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWN
   WD 4  125-163    -RT-----C----VCVLTGHNHYVMCAQFHPTEDLVVSASLDQTVRVWD
   WD 5  195-233    -AV-----V----KHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWR
   WD 6  234-277    MNE-----SKAWEVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWD
   WD 7  278-318    MSK---RTG----VQTFRRDHDRFWVLAAHPNLNLFAAGH-DGGMIVFK
   WD 8  346-390    FNSSKDVAV----MQLRSGSKFPVFNMSYNPAENAVLLCTRASNLENST
   WD 9  477-516    VQQ-----K----RTLASVKISKVKYVIWSADMSHVALLAKHEHSCPLP

   WD40 Template    TGE-----C----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019