WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000356817    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000356817 (Len=880)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000356817, Len=880):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRGGSYPHLLWDVRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNP 80  
WD40-rpts                                              (_________________WD 1________________) 

Query       81 YSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNRQCQFTCHYGTTYEIMTVPNDPYTFLSC 160 
WD40-rpts        (__________________WD 2__________________)(____________________WD 3___________

Query      161 GEDGTVRWFDTRIKTSCTKEDCKDDILINCRRAATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGM 240 
WD40-rpts      _________)(______________________WD 4______________________)                    

Query      241 VARFIPSHLNNKSCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPVKRLRLRGDWSDTG 320 
WD40-rpts          (________________WD 5_______________)     (__________________________WD 6___

Query      321 PRARPESERERDGEQSPNVSLMQRMSDMLSRWFEEASEVAQSNRGRGRSRPRGGTSQSDISTLPTVPSSPDLEVSETAME 400 
WD40-rpts      ______________________)                                                         

Query      401 VDTPAEQFLQPSTSSTMSAQAHSTSSPTESPHSTPLLSSPDSEQRQSVEASGHHTHHQSDSPSSVVNKQLGSMSLDEQQD 480 
WD40-rpts                                                                                      

Query      481 NNNEKLSPKPGTGEPVLSLHYSTEGTTTSTIKLNFTDEWSSIASSSRGIGSHCKSEGQEESFVPQSSVQPPEGDSETKAP 560 
WD40-rpts        (_________________WD 7________________)                                       

Query      561 EESSEDVTKYQEGVSAENPVENHINITQSDKFTAKPLDSNSGERNDLNLDRSCGVPEESASSEKAKEPETSDQTSTESAT 640 
WD40-rpts                                                                                      

Query      641 NENNTNPEPQFQTEATGPSAHEETSTRDSALQDTDDSDDDPVLIPGARYRAGPGDRRSAVARIQEFFRRRKERKEMEELD 720 
WD40-rpts                                                                                      

Query      721 TLNIRRPLVKMVYKGHRNSRTMIKEANFWGANFVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQPHPFDPILASSG 800 
WD40-rpts            (__________________WD 8_________________)   (_________________WD 9________

Query      801 IDYDIKIWSPLEESRIFNRKLADEVITRNELMLEETRNTITVPASFMLRMLASLNHIRADRLEGDRSEGSGQENENEDEE 880 
WD40-rpts      ________)                                                                       



9 WD40-repeats found in QUERY=ENSP00000356817 (Len=880):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    41-79       9.02  487.16  1.7e-05       22.5%     47.87
  WD 2:  Seg  5    83-124      6.66  389.59  0.00035       37.5%     52.80
  WD 3:  Seg  9   125-170      6.07  365.57  0.00074       25.0%     46.57
  WD 4:  Seg 13   171-220      5.86  356.82  0.00097       25.0%     47.03
  WD 5:  Seg 17   245-281      7.62  429.50  0.00010       22.5%     42.04
  WD 6:  Seg 20   287-343      4.68  307.79  0.00442       17.5%      4.27
  WD 7:  Seg 25   483-521      3.23  247.99  0.02797       20.0%     23.61
  WD 8:  Seg 30   727-767      6.05  364.68  0.00076       25.0%     46.42
  WD 9:  Seg 34   771-809      8.09  449.03  5.5e-05       27.5%     52.66
Multiple sequence alignment of 9 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   41-79     -LKLEA---------T-----L-NVHDG------------------CVNTICWN--D--T-GEYILSGSDDTKLVISN
   WD 2   83-124    -RKVLT---------T-----IRSGHRA------------------NIFSAKFL--PCTN-DKQIVSCSGDGVIFYTN
   WD 3  125-170    VEQDAE---------TNRQCQF-TCHYG------------------TTYEIMTV--P-ND-PYTFLSCGEDGTVRWFD
   WD 4  171-220    TRIKTSCTKEDCKDDI-----L-INCRR------------------AATSVAIC--P--PIPYYLAVGCSDSSVRIYD
   WD 5  245-281    ---IPS---------H-----L-NNKSC------------------RVTSLCYS--E--D-GQEILVSYSSDYIYLFD
   WD 6  287-343    -ARELK---------T-----P-SAEERREELRQPPVKRLRLRGDWSDTGPRAR--P--E-SERERDGEQSPNVSLMQ
   WD 7  483-521    -NEKLS---------P-----K-PGTGE------------------PVLSLHYS--T--E-GTTTSTIKLNFTDEWSS
   WD 8  727-767    -PLVKM---------V-----Y-KGHRN------------------SRTMIKEANFW--G-ANFVMSGSDCGHIFIWD
   WD 9  771-809    -AEHLM---------L-----L-EADNH------------------VVNCLQPH--P--F-DPILASSGIDYDIKIWS

   WD40 Template    TGECLR---------T-----L-SGHTS------------------GVTSVSFS--P--D-GKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019