Input parameters:
Query = ENSP00000356817 (Len=880)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000356817, Len=880):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSRGGSYPHLLWDVRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNP 80
WD40-rpts (_________________WD 1________________)
Query 81 YSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNRQCQFTCHYGTTYEIMTVPNDPYTFLSC 160
WD40-rpts (__________________WD 2__________________)(____________________WD 3___________
Query 161 GEDGTVRWFDTRIKTSCTKEDCKDDILINCRRAATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGM 240
WD40-rpts _________)(______________________WD 4______________________)
Query 241 VARFIPSHLNNKSCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPVKRLRLRGDWSDTG 320
WD40-rpts (________________WD 5_______________) (__________________________WD 6___
Query 321 PRARPESERERDGEQSPNVSLMQRMSDMLSRWFEEASEVAQSNRGRGRSRPRGGTSQSDISTLPTVPSSPDLEVSETAME 400
WD40-rpts ______________________)
Query 401 VDTPAEQFLQPSTSSTMSAQAHSTSSPTESPHSTPLLSSPDSEQRQSVEASGHHTHHQSDSPSSVVNKQLGSMSLDEQQD 480
WD40-rpts
Query 481 NNNEKLSPKPGTGEPVLSLHYSTEGTTTSTIKLNFTDEWSSIASSSRGIGSHCKSEGQEESFVPQSSVQPPEGDSETKAP 560
WD40-rpts (_________________WD 7________________)
Query 561 EESSEDVTKYQEGVSAENPVENHINITQSDKFTAKPLDSNSGERNDLNLDRSCGVPEESASSEKAKEPETSDQTSTESAT 640
WD40-rpts
Query 641 NENNTNPEPQFQTEATGPSAHEETSTRDSALQDTDDSDDDPVLIPGARYRAGPGDRRSAVARIQEFFRRRKERKEMEELD 720
WD40-rpts
Query 721 TLNIRRPLVKMVYKGHRNSRTMIKEANFWGANFVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQPHPFDPILASSG 800
WD40-rpts (__________________WD 8_________________) (_________________WD 9________
Query 801 IDYDIKIWSPLEESRIFNRKLADEVITRNELMLEETRNTITVPASFMLRMLASLNHIRADRLEGDRSEGSGQENENEDEE 880
WD40-rpts ________)
9 WD40-repeats found in QUERY=ENSP00000356817 (Len=880):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 41-79 9.02 487.16 1.7e-05 22.5% 47.87
WD 2: Seg 5 83-124 6.66 389.59 0.00035 37.5% 52.80
WD 3: Seg 9 125-170 6.07 365.57 0.00074 25.0% 46.57
WD 4: Seg 13 171-220 5.86 356.82 0.00097 25.0% 47.03
WD 5: Seg 17 245-281 7.62 429.50 0.00010 22.5% 42.04
WD 6: Seg 20 287-343 4.68 307.79 0.00442 17.5% 4.27
WD 7: Seg 25 483-521 3.23 247.99 0.02797 20.0% 23.61
WD 8: Seg 30 727-767 6.05 364.68 0.00076 25.0% 46.42
WD 9: Seg 34 771-809 8.09 449.03 5.5e-05 27.5% 52.66
Multiple sequence alignment of 9 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 41-79 -LKLEA---------T-----L-NVHDG------------------CVNTICWN--D--T-GEYILSGSDDTKLVISN
WD 2 83-124 -RKVLT---------T-----IRSGHRA------------------NIFSAKFL--PCTN-DKQIVSCSGDGVIFYTN
WD 3 125-170 VEQDAE---------TNRQCQF-TCHYG------------------TTYEIMTV--P-ND-PYTFLSCGEDGTVRWFD
WD 4 171-220 TRIKTSCTKEDCKDDI-----L-INCRR------------------AATSVAIC--P--PIPYYLAVGCSDSSVRIYD
WD 5 245-281 ---IPS---------H-----L-NNKSC------------------RVTSLCYS--E--D-GQEILVSYSSDYIYLFD
WD 6 287-343 -ARELK---------T-----P-SAEERREELRQPPVKRLRLRGDWSDTGPRAR--P--E-SERERDGEQSPNVSLMQ
WD 7 483-521 -NEKLS---------P-----K-PGTGE------------------PVLSLHYS--T--E-GTTTSTIKLNFTDEWSS
WD 8 727-767 -PLVKM---------V-----Y-KGHRN------------------SRTMIKEANFW--G-ANFVMSGSDCGHIFIWD
WD 9 771-809 -AEHLM---------L-----L-EADNH------------------VVNCLQPH--P--F-DPILASSGIDYDIKIWS
WD40 Template TGECLR---------T-----L-SGHTS------------------GVTSVSFS--P--D-GKRLVSGSEDGTIKVWD